CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87549	Canola	cytosol	98.46	89.86
CDX79184	Canola	cytosol	95.37	86.07
CDX68067	Canola	cytosol	94.44	85.24
AT1G77000.1	Thale cress	cytosol	91.98	82.78
CDX96592	Canola	cytosol	86.73	77.62
KRH64574	Soybean	cytosol	76.85	77.57
CDY67973	Canola	plasma membrane	85.49	76.52
CDY58589	Canola	extracellular	29.01	71.76
PGSC0003DMT400063955	Potato	cytosol, extracellular, nucleus	74.69	70.97
CDY58588	Canola	extracellular	28.4	69.7
KRH53355	Soybean	cytosol	76.23	66.4
KRH15905	Soybean	cytosol	75.93	66.31
KRH18090	Soybean	cytosol	76.54	66.13
Solyc04g063380.2.1	Tomato	cytosol	73.77	65.66
GSMUA_Achr10P...	Banana	cytosol	67.28	61.41
Zm00001d038224_P004	Maize	cytosol	68.21	60.05
VIT_18s0001g15010.t01	Wine grape	mitochondrion	77.78	58.88
EES18256	Sorghum	cytosol, nucleus, plastid	66.98	58.81
GSMUA_Achr6P18620_001	Banana	cytosol	66.36	58.58
GSMUA_AchrUn_...	Banana	cytosol	65.74	57.88
Os05t0425700-01	Rice	cytosol	66.05	56.91
Os01t0881900-01	Rice	cytosol	66.36	56.73
TraesCS1A01G264900.1	Wheat	cytosol	64.51	56.49
TraesCS1D01G265100.1	Wheat	cytosol	64.51	56.49
TraesCS3D01G402900.2	Wheat	cytosol	65.74	56.05
TraesCS3A01G407700.1	Wheat	cytosol	65.74	56.05
HORVU1Hr1G065030.2	Barley	cytosol	65.43	55.94
TraesCS3B01G440600.2	Wheat	cytosol	65.74	55.91
TraesCS1B01G275600.1	Wheat	cytosol	64.81	55.41
EES03986	Sorghum	cytosol	64.51	54.86
HORVU3Hr1G091200.4	Barley	cytosol	65.43	50.48
Zm00001d000224_P001	Maize	cytosol	64.51	48.27
CDX88014	Canola	cytosol	22.84	18.27
CDY06032	Canola	cytosol	19.44	17.85
CDX71945	Canola	cytosol	19.14	17.56
CDY40798	Canola	cytosol	22.22	17.52
CDY46953	Canola	cytosol	21.6	17.03
CDX87090	Canola	cytosol	25.62	13.47
CDY19807	Canola	cytosol	25.31	13.31
CDX88173	Canola	cytosol	24.69	12.86
CDY28039	Canola	cytosol	15.43	12.82
CDX80753	Canola	endoplasmic reticulum	26.54	12.72
CDY35942	Canola	cytosol	15.43	12.66
CDY11182	Canola	cytosol, endoplasmic reticulum, nucleus	26.23	12.57
CDX80503	Canola	cytosol	24.07	12.56
CDY45764	Canola	cytosol, peroxisome, plastid	22.53	12.52
CDX76980	Canola	cytosol	23.15	12.52
CDY35358	Canola	cytosol	24.07	12.52
CDY19741	Canola	cytosol	23.15	12.16
CDY09760	Canola	cytosol	23.46	12.12
CDX90588	Canola	cytosol	23.46	12.08
CDY53337	Canola	cytosol	23.15	11.74
CDX88253	Canola	cytosol	23.15	11.72
CDX80608	Canola	cytosol	23.15	11.72
CDX83114	Canola	cytosol	16.36	10.66
CDX68575	Canola	cytosol	16.67	10.57
CDY43846	Canola	plastid	16.67	10.51
CDY25663	Canola	plastid	16.67	10.51
CDX81326	Canola	cytosol	16.98	10.5
CDY18646	Canola	cytosol	16.98	10.5
CDY29091	Canola	plastid	4.63	8.67
CDY12824	Canola	nucleus	17.28	5.14
CDY01426	Canola	cytosol	16.98	5.08

Protein Annotations

MapMan:19.2.2.8.1.4.1	Gene3D:3.80.10.10	EnsemblPlants:CDX88336	ProteinID:CDX88336	ProteinID:CDX88336.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00147853001	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF13516	PANTHER:PTHR44673	PANTHER:PTHR44673:SF1	SMART:SM00367
SUPFAM:SSF52047	UniParc:UPI0004EE2D6B	:	:	:	:

Description

BnaC06g37800D

Coordinates

chrLK031855:+:438051..441051

Molecular Weight (calculated)

35599.3 Da

IEP (calculated)

8.095

GRAVY (calculated)

0.049

Length

324 amino acids

Sequence
(BLAST)

001: MRILNLVDDR TVIIASGVCS GWRDAISFGL TRLSLSWCKK DMNSLVLSLA PKLVKLQTLV LRQDKPQLED NAVEAIANHC HELQALDLSK SLKLTDHSLY
101: SLARGCTNLT KLNLSGCTSF SDTALAYLTR FCRKLKVLNL CGCVEAVSDS ALQAIGENCS QMQSLNLGWC EKISDDGVMS LAYGCPDLRS LDLCGCVLIT
201: DESVVALANR CVHLRSLGLY YCRNITDRAM YSLAQSGVKN KHEMWRSVKK GKFDEEGLRN LNISQCTYLT PSAVQAVCDT FPALHTCSGR HSLVMSGCLN
301: LTSVHCACIL QAHRTRTALP HPAH

Best Arabidopsis Sequence Match ( AT1G77000.2 )
(BLAST)

001: MVSEGATRKE LNLCFENMKM EGVLISEWKD IPVELLMKIL NLVDDRTVII ASCICSGWRD AVSLGLTRLS LSWCKKNMNS LVLSLAPKFV KLQTLVLRQD
101: KPQLEDNAVE AIANHCHELQ DLDLSKSSKI TDHSLYSLAR GCTNLTKLNL SGCTSFSDTA LAHLTRFCRK LKILNLCGCV EAVSDNTLQA IGENCNQLQS
201: LNLGWCENIS DDGVMSLAYG CPDLRTLDLC SCVLITDESV VALANRCIHL RSLGLYYCRN ITDRAMYSLA QSGVKNKHEM WRAVKKGKFD EEGLRSLNIS
301: QCTYLTPSAV QAVCDTFPAL HTCSGRHSLV MSGCLNLQSV HCACILQAHR THTVYPHPAH

Arabidopsis Description

SKP2BF-box protein SKP2B [Source:UniProtKB/Swiss-Prot;Acc:O49286]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.