Factsheet for Solyc06g005380.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074998	Potato	cytosol	97.4	97.4
VIT_08s0007g07030.t01	Wine grape	cytosol	70.52	69.71
CDX71945	Canola	cytosol	69.08	67.71
CDY06032	Canola	cytosol	67.63	66.29
GSMUA_Achr2P17760_001	Banana	cytosol	67.05	65.54
Bra007401.1-P	Field mustard	cytosol	45.95	64.63
AT3G58530.1	Thale cress	cytosol	65.9	64.59
EES04933	Sorghum	cytosol	65.03	64.47
HORVU3Hr1G012530.12	Barley	cytosol	63.01	62.11
Os02t0281150-01	Rice	cytosol	63.87	62.08
TraesCS3D01G067600.2	Wheat	cytosol	62.72	62.0
TraesCS3B01G080300.1	Wheat	cytosol	62.72	61.82
TraesCS3A01G067800.1	Wheat	cytosol	62.14	61.25
Zm00001d015974_P002	Maize	cytosol	62.43	60.34
KRH38032	Soybean	cytosol	65.9	60.32
Solyc04g008980.2.1	Tomato	cytosol	20.23	16.67
Solyc04g063380.2.1	Tomato	cytosol	17.34	16.48
Solyc06g030610.1.1	Tomato	cytosol	10.98	13.87
Solyc06g054440.2.1	Tomato	mitochondrion	21.1	13.64
Solyc12g009560.1.1	Tomato	cytosol	23.99	13.03
Solyc07g008250.2.1	Tomato	cytosol, nucleus, peroxisome	23.7	12.79
Solyc08g060810.2.1	Tomato	plastid	24.28	12.63
Solyc01g099970.2.1	Tomato	extracellular	22.54	12.6
Solyc10g076290.1.1	Tomato	cytosol	24.57	12.59
Solyc04g078490.1.1	Tomato	cytosol	19.36	12.55
Solyc06g049010.1.1	Tomato	plastid	21.97	12.26
Solyc02g092990.1.1	Tomato	plastid	18.79	11.82
Solyc06g030620.1.1	Tomato	cytosol	6.65	11.44
Solyc06g007680.1.1	Tomato	cytosol	12.43	10.75
Solyc03g044220.1.1	Tomato	cytosol	17.05	10.75

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	InterPro:IPR001611	InterPro:IPR032675
UniProt:K4C322	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF13516	PANTHER:PTHR44001
SMART:SM00367	SUPFAM:SSF52047	EnsemblPlantsGene:Solyc06g005380.2	EnsemblPlants:Solyc06g005380.2.1	UniParc:UPI0002765B32	:

Description

No Description!

Coordinates

chr6:+:387259..395066

Molecular Weight (calculated)

38858.6 Da

IEP (calculated)

7.538

GRAVY (calculated)

0.120

Length

346 amino acids

Sequence
(BLAST)

001: MAAETIWNKE TVPKVMKLVT TRLQQRDLIT LLLVSPSIHR TLLSHPSLWL VLDFHEMSDA GDRLVSALSL PRYRNVKHIN LEFAQDIEDK QLENVKSKCG
101: DSLLDLEILN LNGCQRISDK GIEVVTNTCP KLKVFSIYWN VRVTDVGITH LVKNCRYVVD LNLSGCKNIT DKSLHLVADN YQELESLNIT RCIKMTDSGL
201: QRILLNCSSL QTLNLYALST LTDEAYKMIS RLPHLRFLDL CGAQNLTDDG LSCISMCKNL VSLNLTWCVQ ISDVGVIAIA QGCRSLELLS LFGILGVSDR
301: CLEVLSSFCS NTLTTLDVNG CINIKNRSRD QLLKLFPNLI CFKVHS

Best Arabidopsis Sequence Match ( AT3G58530.1 )
(BLAST)

001: MEAKKVTEEE EETWRREIVT SVMRLVSTRL PQTDLISLLL VSPWLYRTLI SYPSIWLTIN LREMTNAGDR LLAALSLPRY RQVKHINLEF AQGVVDSHLK
101: LVKTECPDAL LSLEWLNLNV CQKISDNGIE AITSICPKLK VFSIYWNVRV TDAGIRNLVK NCRHITDLNL SGCKSLTDKS MQLVAESYPD LESLNITRCV
201: KITDDGLLQV LQKCFSLQTL NLYALSGFTD KAYMKISLLA DLRFLDICGA QNISDEGIGH IAKCNKLESL NLTWCVRITD AGVNTIANSC TSLEFLSLFG
301: IVGVTDRCLE TLSQTCSTTL TTLDVNGCTG IKRRSREELL QMFPRLTCFK VHS

Arabidopsis Description

F-box protein At3g58530 [Source:UniProtKB/Swiss-Prot;Acc:Q8LB33]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.