Factsheet for Solyc06g030610.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 2
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g009170.2.1
Solyc01g099290.2.1
Solyc06g073720.1.1
Solyc06g073730.1.1
Solyc10g081530.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25490.1	Solyc01g009170.2.1	AT2G27050.1	14675533
AT2G25490.1	Solyc06g073720.1.1	AT2G27050.1	14675533
AT2G25490.1	Solyc06g073730.1.1	AT2G27050.1	14675533
AT2G25490.1	Solyc01g009170.2.1	AT3G20770.1	14675532
AT2G25490.1	Solyc06g073720.1.1	AT3G20770.1	14675532
AT2G25490.1	Solyc06g073730.1.1	AT3G20770.1	14675532
AT2G25490.1	Solyc01g009170.2.1	AT3G20770.1	14675533
AT2G25490.1	Solyc06g073720.1.1	AT3G20770.1	14675533
AT2G25490.1	Solyc06g073730.1.1	AT3G20770.1	14675533
AT2G25490.1	Solyc10g081530.1.1	AT3G28715.1	21798944
AT2G25490.1	Solyc01g099290.2.1	AT4G02570.1	14675533
AT5G25350.1	Solyc01g009170.2.1	AT3G20770.1	14675532
AT5G25350.1	Solyc06g073720.1.1	AT3G20770.1	14675532
AT5G25350.1	Solyc06g073730.1.1	AT3G20770.1	14675532
AT5G25350.1	Solyc01g009170.2.1	AT3G20770.1	14675533
AT5G25350.1	Solyc06g073720.1.1	AT3G20770.1	14675533
AT5G25350.1	Solyc06g073730.1.1	AT3G20770.1	14675533
AT5G25350.1	Solyc01g099290.2.1	AT4G02570.1	14675533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400094835	Potato	cytosol	47.81	53.47
Solyc06g030620.1.1	Tomato	cytosol	34.67	47.26
PGSC0003DMT400089433	Potato	mitochondrion	58.03	34.64
Solyc06g049010.1.1	Tomato	plastid	51.46	22.74
Solyc08g060810.2.1	Tomato	plastid	51.46	21.2
KRH05167	Soybean	cytosol	46.72	20.98
KRH15886	Soybean	cytosol	47.08	20.03
KRH61771	Soybean	cytosol	45.26	19.5
VIT_04s0008g05470.t01	Wine grape	cytosol	47.08	19.34
Solyc12g009560.1.1	Tomato	cytosol	44.89	19.31
KRH52439	Soybean	cytosol, nucleus, peroxisome	44.53	19.12
CDX88173	Canola	cytosol	40.88	18.01
HORVU7Hr1G090240.1	Barley	cytosol	35.4	18.0
Solyc07g008250.2.1	Tomato	cytosol, nucleus, peroxisome	41.97	17.94
Bra009835.1-P	Field mustard	cytosol	40.51	17.85
AT5G25350.1	Thale cress	cytosol	40.51	17.82
GSMUA_Achr9P28510_001	Banana	cytosol, nucleus, peroxisome	42.34	17.74
CDX80503	Canola	cytosol	40.15	17.71
HORVU1Hr1G089690.1	Barley	cytosol, extracellular, mitochondrion	17.15	17.67
CDX87090	Canola	cytosol	38.69	17.21
Bra036542.1-P	Field mustard	cytosol	38.69	17.21
CDX76980	Canola	cytosol	37.59	17.2
GSMUA_Achr4P30680_001	Banana	cytosol	40.88	17.18
GSMUA_Achr6P05220_001	Banana	cytosol	40.88	17.13
CDY19807	Canola	cytosol	38.32	17.05
AT2G25490.1	Thale cress	plastid	39.05	17.04
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	41.24	16.92
Zm00001d015778_P001	Maize	cytosol	39.05	16.64
CDY35358	Canola	cytosol	37.59	16.53
GSMUA_Achr2P15920_001	Banana	cytosol, peroxisome, plastid	40.15	16.47
Bra034254.1-P	Field mustard	cytosol	37.23	16.4
Zm00001d053642_P001	Maize	cytosol	38.69	16.28
HORVU6Hr1G038430.3	Barley	plastid	38.69	16.23
TraesCS6A01G181900.1	Wheat	cytosol	38.32	16.18
EES06473	Sorghum	cytosol, peroxisome, plasma membrane	38.32	16.03
TraesCS6D01G169200.1	Wheat	cytosol	37.96	16.02
TraesCS6B01G210700.1	Wheat	cytosol	37.96	16.02
EER90022	Sorghum	cytosol, plastid	36.13	15.81
HORVU5Hr1G029670.1	Barley	mitochondrion	29.2	15.59
TraesCS7A01G377500.1	Wheat	cytosol	36.5	15.41
Os02t0200900-01	Rice	cytosol	36.86	15.3
TraesCS7B01G278800.1	Wheat	cytosol	36.13	15.3
TraesCS7D01G373800.1	Wheat	cytosol	36.13	15.21
HORVU5Hr1G000950.4	Barley	plastid	24.09	14.77
Os06t0605900-01	Rice	cytosol	33.58	14.67
Zm00001d000408_P001	Maize	cytosol	36.13	13.32
Zm00001d036880_P003	Maize	cytosol	35.77	13.32
Solyc06g005380.2.1	Tomato	cytosol	13.87	10.98
Solyc10g076290.1.1	Tomato	cytosol	25.91	10.52
Solyc01g099970.2.1	Tomato	extracellular	21.53	9.53
Solyc04g008980.2.1	Tomato	cytosol	14.6	9.52
Solyc04g063380.2.1	Tomato	cytosol	12.41	9.34
Solyc06g007680.1.1	Tomato	cytosol	12.77	8.75
Solyc04g078490.1.1	Tomato	cytosol	16.79	8.61
Solyc02g092990.1.1	Tomato	plastid	16.42	8.18
Solyc06g054440.2.1	Tomato	mitochondrion	15.69	8.04
Solyc03g044220.1.1	Tomato	cytosol	16.06	8.01

Protein Annotations

EnsemblPlants:Solyc06g030610.1.1	EnsemblPlantsGene:Solyc06g030610.1	Gene3D:3.80.10.10	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp
PANTHER:PTHR44327	PANTHER:PTHR44327:SF1	SEG:seg	SMART:SM00367	SUPFAM:SSF52047	UniParc:UPI0002765938
UniProt:K4C4I4	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr6:-:20064847..20065766

Molecular Weight (calculated)

30058.9 Da

IEP (calculated)

6.992

GRAVY (calculated)

0.366

Length

274 amino acids

Sequence
(BLAST)

001: MILCSICMND IGEYNCVEGE GYLVSSLFGR EATSVRLASI TIGTPNHGGL QNLSIQRNNP CYGVTDAGLV AIAQKLDLFK FPIITDKCLL DIVKNCPDIT
101: SLTIYSYSNI GNESLKVVGQ YCPSLNIVVL KCSPFIGHHG LAVQFYLASK VLTEVRLQGL CIRDLSLHIL FNCCEKIESL SLVSCIGMED YPLNLVDSCH
201: SSLLSLTIRK FPGIGNTTIY LVGGLCRKLT HIDLSKFQRI TNEGLIPLAQ NCEANLVVVN LSIVSILQTY KFQQ

Best Arabidopsis Sequence Match ( AT5G25350.1 )
(BLAST)

001: MSGIFRFSGD EDCLLGGSMY LSPGSCPGVY YPARKRLRVA ATSFYSGFEE KQTSIDVLPE ECLFEILRRL PSGQERSACA CVSKHWLNLL SSISRSEVNE
101: SSVQDVEEGE GFLSRSLEGK KATDLRLAAI AVGTSSRGGL GKLQIRGSGF ESKVTDVGLG AVAHGCPSLR IVSLWNLPAV SDLGLSEIAR SCPMIEKLDL
201: SRCPGITDSG LVAIAENCVN LSDLTIDSCS GVGNEGLRAI ARRCVNLRSI SIRSCPRIGD QGVAFLLAQA GSYLTKVKLQ MLNVSGLSLA VIGHYGAAVT
301: DLVLHGLQGV NEKGFWVMGN AKGLKKLKSL SVMSCRGMTD VGLEAVGNGC PDLKHVSLNK CLLVSGKGLV ALAKSALSLE SLKLEECHRI NQFGLMGFLM
401: NCGSKLKAFS LANCLGISDF NSESSLPSPS CSSLRSLSIR CCPGFGDASL AFLGKFCHQL QDVELCGLNG VTDAGVRELL QSNNVGLVKV NLSECINVSD
501: NTVSAISVCH GRTLESLNLD GCKNITNASL VAVAKNCYSV NDLDISNTLV SDHGIKALAS SPNHLNLQVL SIGGCSSITD KSKACIQKLG RTLLGLNIQR
601: CGRISSSTVD TLLENLWRCD ILY

Arabidopsis Description

EBF2EIN3-binding F-box protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q708Y0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.