Factsheet for GSMUA_Achr2P15920_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P11740_001
GSMUA_Achr2P11540_001
GSMUA_Achr3P09440_001
GSMUA_Achr5P27670_001
GSMUA_Achr6P15930_001
GSMUA_Achr6P35890_001
GSMUA_Achr8P21550_001
GSMUA_Achr9P17080_001
GSMUA_Achr9P17620_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25490.1	GSMUA_Achr10P...	AT2G27050.1	14675533
AT2G25490.1	GSMUA_Achr11P...	AT2G27050.1	14675533
AT2G25490.1	GSMUA_Achr2P11540_001	AT2G27050.1	14675533
AT2G25490.1	GSMUA_Achr3P09440_001	AT2G27050.1	14675533
AT2G25490.1	GSMUA_Achr5P27670_001	AT2G27050.1	14675533
AT2G25490.1	GSMUA_Achr6P15930_001	AT2G27050.1	14675533
AT2G25490.1	GSMUA_Achr8P21550_001	AT2G27050.1	14675533
AT2G25490.1	GSMUA_Achr9P17080_001	AT2G27050.1	14675533
AT2G25490.1	GSMUA_Achr10P...	AT3G20770.1	14675532
AT2G25490.1	GSMUA_Achr11P...	AT3G20770.1	14675532
AT2G25490.1	GSMUA_Achr2P11540_001	AT3G20770.1	14675532
AT2G25490.1	GSMUA_Achr3P09440_001	AT3G20770.1	14675532
AT2G25490.1	GSMUA_Achr5P27670_001	AT3G20770.1	14675532
AT2G25490.1	GSMUA_Achr6P15930_001	AT3G20770.1	14675532
AT2G25490.1	GSMUA_Achr8P21550_001	AT3G20770.1	14675532
AT2G25490.1	GSMUA_Achr9P17080_001	AT3G20770.1	14675532
AT2G25490.1	GSMUA_Achr10P...	AT3G20770.1	14675533
AT2G25490.1	GSMUA_Achr11P...	AT3G20770.1	14675533
AT2G25490.1	GSMUA_Achr2P11540_001	AT3G20770.1	14675533
AT2G25490.1	GSMUA_Achr3P09440_001	AT3G20770.1	14675533
AT2G25490.1	GSMUA_Achr5P27670_001	AT3G20770.1	14675533
AT2G25490.1	GSMUA_Achr6P15930_001	AT3G20770.1	14675533
AT2G25490.1	GSMUA_Achr8P21550_001	AT3G20770.1	14675533
AT2G25490.1	GSMUA_Achr9P17080_001	AT3G20770.1	14675533
AT2G25490.1	GSMUA_Achr1P11740_001	AT3G28715.1	21798944
AT2G25490.1	GSMUA_Achr6P35890_001	AT3G28715.1	21798944
AT2G25490.1	GSMUA_Achr9P17620_001	AT4G02570.1	14675533
AT5G25350.1	GSMUA_Achr10P...	AT3G20770.1	14675532
AT5G25350.1	GSMUA_Achr11P...	AT3G20770.1	14675532
AT5G25350.1	GSMUA_Achr2P11540_001	AT3G20770.1	14675532
AT5G25350.1	GSMUA_Achr3P09440_001	AT3G20770.1	14675532
AT5G25350.1	GSMUA_Achr5P27670_001	AT3G20770.1	14675532
AT5G25350.1	GSMUA_Achr6P15930_001	AT3G20770.1	14675532
AT5G25350.1	GSMUA_Achr8P21550_001	AT3G20770.1	14675532
AT5G25350.1	GSMUA_Achr9P17080_001	AT3G20770.1	14675532
AT5G25350.1	GSMUA_Achr10P...	AT3G20770.1	14675533
AT5G25350.1	GSMUA_Achr11P...	AT3G20770.1	14675533
AT5G25350.1	GSMUA_Achr2P11540_001	AT3G20770.1	14675533
AT5G25350.1	GSMUA_Achr3P09440_001	AT3G20770.1	14675533
AT5G25350.1	GSMUA_Achr5P27670_001	AT3G20770.1	14675533
AT5G25350.1	GSMUA_Achr6P15930_001	AT3G20770.1	14675533
AT5G25350.1	GSMUA_Achr8P21550_001	AT3G20770.1	14675533
AT5G25350.1	GSMUA_Achr9P17080_001	AT3G20770.1	14675533
AT5G25350.1	GSMUA_Achr9P17620_001	AT4G02570.1	14675533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P30680_001	Banana	cytosol	76.35	78.22
GSMUA_Achr6P05220_001	Banana	cytosol	74.25	75.84
GSMUA_Achr9P28510_001	Banana	cytosol, nucleus, peroxisome	72.16	73.7
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	71.86	71.86
VIT_11s0016g05410.t01	Wine grape	cytosol	53.14	53.54
PGSC0003DMT400007545	Potato	cytosol	50.45	52.9
Solyc12g009560.1.1	Tomato	cytosol	50.15	52.59
KRH52439	Soybean	cytosol, nucleus, peroxisome	48.5	50.78
Os06t0605900-01	Rice	cytosol	47.6	50.72
KRH61771	Soybean	cytosol	48.2	50.63
Zm00001d053642_P001	Maize	cytosol	49.25	50.54
VIT_04s0008g05470.t01	Wine grape	cytosol	50.45	50.52
KRH03688	Soybean	cytosol	48.2	50.39
KRH20255	Soybean	cytosol	48.2	50.39
HORVU7Hr1G090240.1	Barley	cytosol	40.57	50.28
KRH62989	Soybean	cytosol	48.8	50.15
KRH15886	Soybean	cytosol	48.2	50.0
PGSC0003DMT400079445	Potato	cytosol, nucleus, peroxisome	48.05	50.0
EES06473	Sorghum	cytosol, peroxisome, plasma membrane	48.95	49.92
Zm00001d015778_P001	Maize	cytosol	47.75	49.61
Solyc07g008250.2.1	Tomato	cytosol, nucleus, peroxisome	47.31	49.3
PGSC0003DMT400040977	Potato	nucleus	48.95	48.88
KRH05167	Soybean	cytosol	44.61	48.85
TraesCS6A01G181900.1	Wheat	cytosol	47.31	48.69
TraesCS7A01G377500.1	Wheat	cytosol	47.31	48.69
TraesCS7B01G278800.1	Wheat	cytosol	47.16	48.69
EER90022	Sorghum	cytosol, plastid	45.51	48.56
TraesCS6B01G210700.1	Wheat	cytosol	47.16	48.54
TraesCS6D01G169200.1	Wheat	cytosol	47.16	48.54
Solyc08g060810.2.1	Tomato	plastid	48.2	48.42
TraesCS7D01G373800.1	Wheat	cytosol	47.16	48.39
AT2G25490.1	Thale cress	plastid	45.36	48.25
HORVU6Hr1G038430.3	Barley	plastid	47.16	48.24
Os02t0200900-01	Rice	cytosol	47.01	47.58
AT5G25350.1	Thale cress	cytosol	43.86	47.03
CDX87090	Canola	cytosol	42.81	46.43
Bra036542.1-P	Field mustard	cytosol	42.52	46.1
CDX88173	Canola	cytosol	42.66	45.82
Bra009835.1-P	Field mustard	cytosol	42.52	45.66
CDY19807	Canola	cytosol	42.07	45.62
CDY35358	Canola	cytosol	42.37	45.43
CDX80503	Canola	cytosol	42.22	45.41
Bra034254.1-P	Field mustard	cytosol	42.22	45.34
CDX76980	Canola	cytosol	40.57	45.24
HORVU1Hr1G089690.1	Barley	cytosol, extracellular, mitochondrion	17.52	43.98
PGSC0003DMT400042949	Potato	cytosol	36.08	43.66
Zm00001d036880_P003	Maize	cytosol	47.16	42.8
Zm00001d000408_P001	Maize	cytosol	47.31	42.53
PGSC0003DMT400089433	Potato	mitochondrion	29.19	42.48
KRH04870	Soybean	cytosol	17.22	42.28
Solyc06g049010.1.1	Tomato	plastid	37.87	40.81
Solyc06g030610.1.1	Tomato	cytosol	16.47	40.15
HORVU5Hr1G029670.1	Barley	mitochondrion	30.39	39.57
HORVU5Hr1G000950.4	Barley	plastid	24.85	37.14
PGSC0003DMT400094835	Potato	cytosol	13.17	35.92
Solyc06g030620.1.1	Tomato	cytosol	9.58	31.84
GSMUA_Achr2P17760_001	Banana	cytosol	12.28	23.16
GSMUA_Achr5P19410_001	Banana	cytosol	14.67	23.06
GSMUA_Achr8P15580_001	Banana	cytosol	13.92	22.79
GSMUA_Achr8P13910_001	Banana	mitochondrion	11.68	22.03
GSMUA_Achr9P11380_001	Banana	cytosol	14.67	21.88
GSMUA_AchrUn_...	Banana	cytosol	11.53	20.92
GSMUA_Achr2P05250_001	Banana	cytosol	14.82	20.37
GSMUA_Achr10P...	Banana	cytosol	10.78	20.28
GSMUA_Achr6P18620_001	Banana	cytosol	11.08	20.16
GSMUA_Achr3P22880_001	Banana	cytosol	19.16	20.0
GSMUA_Achr3P28280_001	Banana	plastid	14.67	19.88
GSMUA_Achr6P20450_001	Banana	cytosol	19.31	19.55
GSMUA_Achr8P28940_001	Banana	cytosol	10.93	19.21
GSMUA_Achr4P12920_001	Banana	plastid	14.52	18.98
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	20.21	18.91
GSMUA_Achr11P...	Banana	cytosol	18.56	18.9
GSMUA_Achr9P22570_001	Banana	plastid	12.43	18.86
GSMUA_Achr7P22290_001	Banana	cytosol	20.21	18.85
GSMUA_Achr9P18840_001	Banana	plastid	13.92	12.74

Protein Annotations

Gene3D:1.20.1280.50	MapMan:11.5.2.6	MapMan:19.2.2.8.1.4.2	Gene3D:3.80.10.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr2G15920_001	EnsemblPlants:GSMUA_Achr2P15920_001	EnsemblPlants:GSMUA_Achr2T15920_001
InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp
UniProt:M0S8D3	PFAM:PF12937	PFAM:PF13516	PFscan:PS50181	PANTHER:PTHR44327	PANTHER:PTHR44327:SF1
SMART:SM00256	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	TMHMM:TMhelix	UniParc:UPI00029688F8
SEG:seg	:	:	:	:	:

Description

Putative EIN3-binding F-box protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr2G15920_001]

Coordinates

chr2:+:17039519..17043122

Molecular Weight (calculated)

71770.9 Da

IEP (calculated)

8.709

GRAVY (calculated)

0.168

Length

668 amino acids

Sequence
(BLAST)

001: MGDGCNAFKG HNGVYTLTLP FVAAFAVGVR ARRIRLLRVS APSSVLMAAL VNRGGSDDIC HGGSLFSNLV DSSLLLSLSR NVDVYCSSRK RPRVTAPLAF
101: RAEKKVAYKK QQPRSIDSLP DECLFEILRR LPGDKERSNS ARVSKRWLML LSSIRSSELG ARKKSHVESG KKFLPDLNKN VLLDEQESEN NGYLTRRLDA
201: EEATDIRLAS IALGTCSRGG LGKLFIQGSN STRVTDVGLS AIAHACPALR VLSMWKGLVS VAKKCPNLTS LTIESCANIC NEGLQVIGRS CPKLKSLTIK
301: DCLHVGDQGI ASLVSSASSC LERIKLQALN ISDIVLAVIG HYGKNLIDLS LNGLQNVGEK GFWVMGNALG LQKLRSITIN CCNGLTDKGL QAIAKGSPFL
401: KQLFVRKSCY LSDAGLRSFA ETARALENLH LEDCNRITLM GVLGALLTCN PELKSLVLVR CLGIRDIAFA PTQLPSCMSL RSLTIRDCPG VTGASLQVVG
501: KICPQLQKLD LSGQVGVTDA SLIPLIQSSE VGFVEVNLSG CVNLTDALVT MLVKAHGSTL KMLNLDGCKR ITDQSLVAIA DSCSVFDDLD LSCSSISDYG
601: VAVLASARQL NLCTLSLASC SKVTDKSLPF LGNMGKSMVG LNLQHCSLIS IHGIGLLEEK LWWCDIIS

Best Arabidopsis Sequence Match ( AT2G25490.1 )
(BLAST)

001: MSQIFSFAGE NDFYRRGAIY PNPKDASLLL SLGSFADVYF PPSKRSRVVA PTIFSAFEKK PVSIDVLPDE CLFEIFRRLS GPQERSACAF VSKQWLTLVS
101: SIRQKEIDVP SKITEDGDDC EGCLSRSLDG KKATDVRLAA IAVGTAGRGG LGKLSIRGSN SAKVSDLGLR SIGRSCPSLG SLSLWNVSTI TDNGLLEIAE
201: GCAQLEKLEL NRCSTITDKG LVAIAKSCPN LTELTLEACS RIGDEGLLAI ARSCSKLKSV SIKNCPLVRD QGIASLLSNT TCSLAKLKLQ MLNVTDVSLA
301: VVGHYGLSIT DLVLAGLSHV SEKGFWVMGN GVGLQKLNSL TITACQGVTD MGLESVGKGC PNMKKAIISK SPLLSDNGLV SFAKASLSLE SLQLEECHRV
401: TQFGFFGSLL NCGEKLKAFS LVNCLSIRDL TTGLPASSHC SALRSLSIRN CPGFGDANLA AIGKLCPQLE DIDLCGLKGI TESGFLHLIQ SSLVKINFSG
501: CSNLTDRVIS AITARNGWTL EVLNIDGCSN ITDASLVSIA ANCQILSDLD ISKCAISDSG IQALASSDKL KLQILSVAGC SMVTDKSLPA IVGLGSTLLG
601: LNLQQCRSIS NSTVDFLVER LYKCDILS

Arabidopsis Description

EBF1EIN3-binding F-box protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKK0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.