Factsheet for Bra036542.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000874.1-P
Bra001802.1-P
Bra003735.1-P
Bra008231.1-P
Bra015801.1-P
Bra023927.1-P
Bra035746.1-P
Bra036257.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25350.1	Bra003735.1-P	AT1G75950.1	14675533
AT5G25350.1	Bra008231.1-P	AT1G75950.1	14675533
AT5G25350.1	Bra015801.1-P	AT1G75950.1	14675533
AT5G25350.1	Bra001802.1-P	AT3G20770.1	14675532
AT5G25350.1	Bra023927.1-P	AT3G20770.1	14675532
AT5G25350.1	Bra035746.1-P	AT3G20770.1	14675532
AT5G25350.1	Bra001802.1-P	AT3G20770.1	14675533
AT5G25350.1	Bra023927.1-P	AT3G20770.1	14675533
AT5G25350.1	Bra035746.1-P	AT3G20770.1	14675533
AT5G25350.1	Bra000874.1-P	AT4G02570.1	14675533
AT5G25350.1	Bra036257.1-P	AT4G02570.1	14675533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19807	Canola	cytosol	97.89	97.89
AT5G25350.1	Thale cress	cytosol	84.25	83.31
Bra009835.1-P	Field mustard	cytosol	83.44	82.64
Bra034254.1-P	Field mustard	cytosol	58.6	58.04
KRH15886	Soybean	cytosol	58.77	56.21
KRH61771	Soybean	cytosol	56.01	54.25
KRH05167	Soybean	cytosol	53.41	53.93
KRH52439	Soybean	cytosol, nucleus, peroxisome	55.68	53.76
VIT_04s0008g05470.t01	Wine grape	cytosol	57.63	53.22
PGSC0003DMT400040977	Potato	nucleus	56.49	52.02
Solyc08g060810.2.1	Tomato	plastid	55.36	51.28
GSMUA_Achr4P30680_001	Banana	cytosol	49.84	47.09
GSMUA_Achr6P05220_001	Banana	cytosol	49.35	46.48
HORVU7Hr1G090240.1	Barley	cytosol	40.58	46.38
HORVU1Hr1G089690.1	Barley	cytosol, extracellular, mitochondrion	19.97	46.24
GSMUA_Achr9P28510_001	Banana	cytosol, nucleus, peroxisome	48.38	45.57
EES06473	Sorghum	cytosol, peroxisome, plasma membrane	48.38	45.5
Zm00001d053642_P001	Maize	cytosol	47.56	45.01
TraesCS6D01G169200.1	Wheat	cytosol	47.4	44.99
PGSC0003DMT400094835	Potato	cytosol	17.86	44.9
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	48.54	44.76
EER90022	Sorghum	cytosol, plastid	45.45	44.73
TraesCS6A01G181900.1	Wheat	cytosol	47.08	44.68
PGSC0003DMT400089433	Potato	mitochondrion	33.28	44.66
TraesCS6B01G210700.1	Wheat	cytosol	46.92	44.53
Zm00001d015778_P001	Maize	cytosol	46.43	44.48
HORVU6Hr1G038430.3	Barley	plastid	47.08	44.41
Os02t0200900-01	Rice	cytosol	47.24	44.09
TraesCS7B01G278800.1	Wheat	cytosol	45.78	43.59
PGSC0003DMT400042949	Potato	cytosol	38.96	43.48
TraesCS7D01G373800.1	Wheat	cytosol	45.78	43.32
Solyc06g049010.1.1	Tomato	plastid	43.18	42.9
TraesCS7A01G377500.1	Wheat	cytosol	45.13	42.84
GSMUA_Achr2P15920_001	Banana	cytosol, peroxisome, plastid	46.1	42.52
Os06t0605900-01	Rice	cytosol	42.86	42.11
Solyc06g030620.1.1	Tomato	cytosol	12.99	39.8
Solyc06g030610.1.1	Tomato	cytosol	17.21	38.69
Zm00001d036880_P003	Maize	cytosol	45.94	38.45
HORVU5Hr1G029670.1	Barley	mitochondrion	31.33	37.62
HORVU5Hr1G000950.4	Barley	plastid	27.27	37.58
Zm00001d000408_P001	Maize	cytosol	44.97	37.28
Bra009671.1-P	Field mustard	cytosol	17.21	26.17
Bra003692.1-P	Field mustard	cytosol	14.61	25.07
Bra029367.1-P	Field mustard	cytosol	16.72	25.06
Bra015699.1-P	Field mustard	cytosol	14.29	24.86
Bra012785.1-P	Field mustard	cytosol	24.68	24.2
Bra016422.1-P	Field mustard	cytosol	13.8	24.08
Bra007401.1-P	Field mustard	cytosol	8.93	22.36
Bra032213.1-P	Field mustard	plastid	18.02	21.6
Bra029656.1-P	Field mustard	cytosol	13.8	21.52
Bra029994.1-P	Field mustard	cytosol	17.37	20.94
Bra005669.1-P	Field mustard	cytosol	22.24	20.51
Bra036607.1-P	Field mustard	cytosol	20.94	20.19
Bra037120.1-P	Field mustard	cytosol	17.05	19.96
Bra009931.1-P	Field mustard	cytosol	20.13	19.38

Protein Annotations

MapMan:11.5.2.6	MapMan:19.2.2.8.1.4.2	Gene3D:3.80.10.10	EnsemblPlantsGene:Bra036542	EnsemblPlants:Bra036542.1	EnsemblPlants:Bra036542.1-P
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611
InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	UniProt:M4F633
PFAM:PF00560	PFAM:PF00646	PFAM:PF13516	PANTHER:PTHR44327	PANTHER:PTHR44327:SF1	SMART:SM00256
SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0002541C89	SEG:seg	:

Description

AT5G25350 (E=7e-267) EBF2 | EBF2 (EIN3-BINDING F BOX PROTEIN 2); protein binding

Coordinates

chrA09:-:1666794..1668788

Molecular Weight (calculated)

65261.8 Da

IEP (calculated)

8.002

GRAVY (calculated)

0.114

Length

616 amino acids

Sequence
(BLAST)

001: MSGIFSFSGD EEFFNGGSMY LSTGSCSGVY LPPRKRLRVA APSLYSSFNQ KQTSIEVLPD ECLFEILRRL PSGKERSACA CVSKHWLNTL TSIKANESLQ
101: EVESEGFLSR SLEGNKATDL RLAAISVGTS SRGGLGKLQI RGSGFESRVT DAGIESIAYG CPSLKSLSLW NLPAVSDKGL SEIARCCPML ERLDLSRCPG
201: VTDKGLVAVA ESCRNLNDLT IDSCSGVGNE GLRAVARGCS SLRSISLRSC PRVGDQGVAF LLAQAGSYLT KVKLQMVNVT GLSLAVLGHY GVAVTELVLS
301: GLQGVNEKGF WVMGNAKGMK KLKSLSVTSC RGMTDVGVEA VGSGCPDLKH VSLNKCLLVS GKGLVSLAKS ALALESLKLE ECHRINHFGF LGFLMNCGEK
401: LKAFSLVNCL GIQDLNSESH LTSTSSLRSL SVRCCPGFGD ASLTFLGKFC HQLQDVELCG LNGVTDAGVL SLLQSNNVGL VKLNLNGCVN VSDNAVSAVS
501: FSHGSTLESL SLDGCKNITD ASLVTVSKNC YSVNDLDVSN TLVSDHGIKA LASSPNHLNL QVLSLGGCSG ITDKSKACIQ KLGRTLLGLN IQRCGRISSS
601: TVDSLLEQLW RCDILY

Best Arabidopsis Sequence Match ( AT5G25350.1 )
(BLAST)

001: MSGIFRFSGD EDCLLGGSMY LSPGSCPGVY YPARKRLRVA ATSFYSGFEE KQTSIDVLPE ECLFEILRRL PSGQERSACA CVSKHWLNLL SSISRSEVNE
101: SSVQDVEEGE GFLSRSLEGK KATDLRLAAI AVGTSSRGGL GKLQIRGSGF ESKVTDVGLG AVAHGCPSLR IVSLWNLPAV SDLGLSEIAR SCPMIEKLDL
201: SRCPGITDSG LVAIAENCVN LSDLTIDSCS GVGNEGLRAI ARRCVNLRSI SIRSCPRIGD QGVAFLLAQA GSYLTKVKLQ MLNVSGLSLA VIGHYGAAVT
301: DLVLHGLQGV NEKGFWVMGN AKGLKKLKSL SVMSCRGMTD VGLEAVGNGC PDLKHVSLNK CLLVSGKGLV ALAKSALSLE SLKLEECHRI NQFGLMGFLM
401: NCGSKLKAFS LANCLGISDF NSESSLPSPS CSSLRSLSIR CCPGFGDASL AFLGKFCHQL QDVELCGLNG VTDAGVRELL QSNNVGLVKV NLSECINVSD
501: NTVSAISVCH GRTLESLNLD GCKNITNASL VAVAKNCYSV NDLDISNTLV SDHGIKALAS SPNHLNLQVL SIGGCSSITD KSKACIQKLG RTLLGLNIQR
601: CGRISSSTVD TLLENLWRCD ILY

Arabidopsis Description

EBF2EIN3-binding F-box protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q708Y0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.