Factsheet for PGSC0003DMT400040977

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015145
PGSC0003DMT400015148
PGSC0003DMT400022477
PGSC0003DMT400063662
PGSC0003DMT400072522

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25490.1	PGSC0003DMT400015145	AT2G27050.1	14675533
AT2G25490.1	PGSC0003DMT400015148	AT2G27050.1	14675533
AT2G25490.1	PGSC0003DMT400022477	AT2G27050.1	14675533
AT2G25490.1	PGSC0003DMT400015145	AT3G20770.1	14675532
AT2G25490.1	PGSC0003DMT400015148	AT3G20770.1	14675532
AT2G25490.1	PGSC0003DMT400022477	AT3G20770.1	14675532
AT2G25490.1	PGSC0003DMT400015145	AT3G20770.1	14675533
AT2G25490.1	PGSC0003DMT400015148	AT3G20770.1	14675533
AT2G25490.1	PGSC0003DMT400022477	AT3G20770.1	14675533
AT2G25490.1	PGSC0003DMT400072522	AT3G28715.1	21798944
AT2G25490.1	PGSC0003DMT400063662	AT4G02570.1	14675533
AT5G25350.1	PGSC0003DMT400015145	AT3G20770.1	14675532
AT5G25350.1	PGSC0003DMT400015148	AT3G20770.1	14675532
AT5G25350.1	PGSC0003DMT400022477	AT3G20770.1	14675532
AT5G25350.1	PGSC0003DMT400015145	AT3G20770.1	14675533
AT5G25350.1	PGSC0003DMT400015148	AT3G20770.1	14675533
AT5G25350.1	PGSC0003DMT400022477	AT3G20770.1	14675533
AT5G25350.1	PGSC0003DMT400063662	AT4G02570.1	14675533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g060810.2.1	Tomato	plastid	94.92	95.49
VIT_04s0008g05470.t01	Wine grape	cytosol	63.98	64.17
KRH15886	Soybean	cytosol	61.44	63.82
KRH05167	Soybean	cytosol	56.65	62.13
KRH61771	Soybean	cytosol	58.15	61.16
PGSC0003DMT400042949	Potato	cytosol	49.93	60.51
KRH52439	Soybean	cytosol, nucleus, peroxisome	57.7	60.5
PGSC0003DMT400089433	Potato	mitochondrion	40.96	59.7
PGSC0003DMT400007545	Potato	cytosol	56.8	59.65
AT2G25490.1	Thale cress	plastid	55.61	59.24
CDX76980	Canola	cytosol	52.91	59.1
AT5G25350.1	Thale cress	cytosol	53.51	57.46
Bra034254.1-P	Field mustard	cytosol	53.36	57.4
CDY35358	Canola	cytosol	53.21	57.14
CDX88173	Canola	cytosol	52.91	56.91
CDX80503	Canola	cytosol	52.77	56.84
Bra009835.1-P	Field mustard	cytosol	52.77	56.75
PGSC0003DMT400094835	Potato	cytosol	20.78	56.73
PGSC0003DMT400079445	Potato	cytosol, nucleus, peroxisome	54.41	56.7
CDX87090	Canola	cytosol	52.17	56.66
Bra036542.1-P	Field mustard	cytosol	52.02	56.49
CDY19807	Canola	cytosol	51.57	56.01
GSMUA_Achr9P28510_001	Banana	cytosol, nucleus, peroxisome	52.47	53.67
GSMUA_Achr4P30680_001	Banana	cytosol	51.72	53.07
GSMUA_Achr6P05220_001	Banana	cytosol	51.87	53.06
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	51.12	51.2
HORVU7Hr1G090240.1	Barley	cytosol	40.06	49.72
EES06473	Sorghum	cytosol, peroxisome, plasma membrane	48.43	49.47
Zm00001d015778_P001	Maize	cytosol	47.53	49.46
TraesCS6D01G169200.1	Wheat	cytosol	47.83	49.31
TraesCS6A01G181900.1	Wheat	cytosol	47.68	49.15
TraesCS6B01G210700.1	Wheat	cytosol	47.68	49.15
Zm00001d053642_P001	Maize	cytosol	47.68	49.0
GSMUA_Achr2P15920_001	Banana	cytosol, peroxisome, plastid	48.88	48.95
HORVU6Hr1G038430.3	Barley	plastid	47.38	48.55
HORVU1Hr1G089690.1	Barley	cytosol, extracellular, mitochondrion	19.28	48.5
Os02t0200900-01	Rice	cytosol	47.38	48.03
EER90022	Sorghum	cytosol, plastid	44.84	47.92
TraesCS7D01G373800.1	Wheat	cytosol	45.89	47.16
TraesCS7B01G278800.1	Wheat	cytosol	45.59	47.14
TraesCS7A01G377500.1	Wheat	cytosol	45.44	46.84
Os06t0605900-01	Rice	cytosol	41.7	44.5
Zm00001d036880_P003	Maize	cytosol	44.54	40.49
HORVU5Hr1G029670.1	Barley	mitochondrion	30.79	40.16
HORVU5Hr1G000950.4	Barley	plastid	26.46	39.6
Zm00001d000408_P001	Maize	cytosol	43.65	39.3
PGSC0003DMT400074998	Potato	cytosol	13.0	25.14
PGSC0003DMT400063955	Potato	cytosol, extracellular, nucleus	12.41	24.34
PGSC0003DMT400079115	Potato	cytosol	21.97	24.22
PGSC0003DMT400029999	Potato	cytosol	14.95	23.92
PGSC0003DMT400030966	Potato	cytosol, plasma membrane, plastid	23.62	23.76
PGSC0003DMT400008648	Potato	cytosol	5.68	22.75
PGSC0003DMT400063732	Potato	cytosol	21.52	22.46
PGSC0003DMT400053176	Potato	cytosol	12.71	21.79
PGSC0003DMT400053918	Potato	cytosol	17.64	21.49
PGSC0003DMT400064250	Potato	mitochondrion	17.64	21.45
PGSC0003DMT400091765	Potato	cytosol	17.34	16.43

Protein Annotations

EntrezGene:102605047	MapMan:11.5.2.6	MapMan:19.2.2.8.1.4.2	Gene3D:3.80.10.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	UniProt:M1BAQ4	PFAM:PF00646	PFAM:PF13516
EnsemblPlantsGene:PGSC0003DMG400015853	PGSC:PGSC0003DMG400015853	EnsemblPlants:PGSC0003DMT400040977	PANTHER:PTHR44327	PANTHER:PTHR44327:SF1	SMART:SM00256
SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI000294D538	RefSeq:XP_006364926.1	:

Description

EIN3-binding F-box protein 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400015853]

Coordinates

chr8:+:15998653..16002234

Molecular Weight (calculated)

71501.1 Da

IEP (calculated)

6.857

GRAVY (calculated)

0.220

Length

669 amino acids

Sequence
(BLAST)

001: MSKVFNFSGD DAFYHGGAVY PSPKESSLFL SLGNHVDVYF PPCKRSRVAV PFVFTEKKQK LSSIDVLPDE CLFEVLRRLS DGKERSASAC VSKRWLMLLS
101: SIHGDETVIS DLNPSLETEE RSIQTALVKP VDCVKKGEVL DSNGAEVADA ESQDIEGEGH LSRCLDGKKA TDVRLAAIAV GTPSHGGLGK LSIRGSNPIR
201: GVTDTGLKAI ARGCPSLRAL SLWNVSSVSD EGLIEIAQGC HLLEKLDLCQ CPAITDMSLM AIAKNCPNLT SLTIESCSKI GNETLQAVGR FCPKLKFVSL
301: KNCPLIGDQG IASLFSSAGN VLTKVKLYAL NISDISLAVI GHYGIAVTDI VLIGLQNINE RGFWVMGNGQ GLQKLRSLAI TACHGVTDLG LEALGKGCPN
401: LKLFCLRKCT ILSDNGLVAF AKGSVALENL QLEECHRITQ AGFVGVLLSC GKKLKVLSMV NCFGVKELAC RFPSVLPCNS LQSLSIRNCP GVGNATLAIV
501: GRLCPKLTHL ELSGLLEVTD EGLFPLVQSC EAGLVKVNLS GCVNVTDRSV SFITELHGGS LESLNVDECP YVTDATLLAI SNNCWLLKEL DISKCGITDS
601: GIASLASTVR LNLQILSLSG CSMLSDKSVP FLQKLGQTLV GLNIQHCNGV SSRCVDLLLE QLWRCDILS

Best Arabidopsis Sequence Match ( AT2G25490.1 )
(BLAST)

001: MSQIFSFAGE NDFYRRGAIY PNPKDASLLL SLGSFADVYF PPSKRSRVVA PTIFSAFEKK PVSIDVLPDE CLFEIFRRLS GPQERSACAF VSKQWLTLVS
101: SIRQKEIDVP SKITEDGDDC EGCLSRSLDG KKATDVRLAA IAVGTAGRGG LGKLSIRGSN SAKVSDLGLR SIGRSCPSLG SLSLWNVSTI TDNGLLEIAE
201: GCAQLEKLEL NRCSTITDKG LVAIAKSCPN LTELTLEACS RIGDEGLLAI ARSCSKLKSV SIKNCPLVRD QGIASLLSNT TCSLAKLKLQ MLNVTDVSLA
301: VVGHYGLSIT DLVLAGLSHV SEKGFWVMGN GVGLQKLNSL TITACQGVTD MGLESVGKGC PNMKKAIISK SPLLSDNGLV SFAKASLSLE SLQLEECHRV
401: TQFGFFGSLL NCGEKLKAFS LVNCLSIRDL TTGLPASSHC SALRSLSIRN CPGFGDANLA AIGKLCPQLE DIDLCGLKGI TESGFLHLIQ SSLVKINFSG
501: CSNLTDRVIS AITARNGWTL EVLNIDGCSN ITDASLVSIA ANCQILSDLD ISKCAISDSG IQALASSDKL KLQILSVAGC SMVTDKSLPA IVGLGSTLLG
601: LNLQQCRSIS NSTVDFLVER LYKCDILS

Arabidopsis Description

EBF1EIN3-binding F-box protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKK0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.