Factsheet for PGSC0003DMT400007545

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g009560.1.1	Tomato	cytosol	97.17	97.17
PGSC0003DMT400079445	Potato	cytosol, nucleus, peroxisome	77.86	77.26
VIT_11s0016g05410.t01	Wine grape	cytosol	73.0	70.14
KRH20255	Soybean	cytosol	67.82	67.61
KRH03688	Soybean	cytosol	67.82	67.61
KRH62989	Soybean	cytosol	67.19	65.85
KRH04870	Soybean	cytosol	24.65	57.72
PGSC0003DMT400040977	Potato	nucleus	59.65	56.8
GSMUA_Achr4P30680_001	Banana	cytosol	55.26	53.99
GSMUA_Achr6P05220_001	Banana	cytosol	55.1	53.67
GSMUA_Achr9P28510_001	Banana	cytosol, nucleus, peroxisome	54.16	52.75
HORVU1Hr1G089690.1	Barley	cytosol, extracellular, mitochondrion	21.82	52.26
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	53.69	51.2
PGSC0003DMT400089433	Potato	mitochondrion	36.58	50.76
Zm00001d015778_P001	Maize	cytosol	51.18	50.7
HORVU7Hr1G090240.1	Barley	cytosol	42.7	50.46
GSMUA_Achr2P15920_001	Banana	cytosol, peroxisome, plastid	52.9	50.45
Zm00001d053642_P001	Maize	cytosol	51.33	50.23
EES06473	Sorghum	cytosol, peroxisome, plasma membrane	51.49	50.08
TraesCS7B01G278800.1	Wheat	cytosol	49.92	49.15
TraesCS7A01G377500.1	Wheat	cytosol	49.76	48.84
TraesCS7D01G373800.1	Wheat	cytosol	49.76	48.69
TraesCS6D01G169200.1	Wheat	cytosol	48.98	48.07
TraesCS6B01G210700.1	Wheat	cytosol	48.98	48.07
TraesCS6A01G181900.1	Wheat	cytosol	48.98	48.07
PGSC0003DMT400042949	Potato	cytosol	41.6	48.01
EER90022	Sorghum	cytosol, plastid	47.1	47.92
Os02t0200900-01	Rice	cytosol	49.45	47.73
HORVU6Hr1G038430.3	Barley	plastid	48.82	47.63
Os06t0605900-01	Rice	cytosol	46.78	47.53
PGSC0003DMT400094835	Potato	cytosol	17.43	45.31
HORVU5Hr1G029670.1	Barley	mitochondrion	34.85	43.27
HORVU5Hr1G000950.4	Barley	plastid	29.36	41.83
Zm00001d036880_P003	Maize	cytosol	46.94	40.62
Zm00001d000408_P001	Maize	cytosol	47.1	40.38
PGSC0003DMT400008648	Potato	cytosol	6.44	24.55
PGSC0003DMT400063955	Potato	cytosol, extracellular, nucleus	13.03	24.34
PGSC0003DMT400074998	Potato	cytosol	13.19	24.28
PGSC0003DMT400029999	Potato	cytosol	15.7	23.92
PGSC0003DMT400079115	Potato	cytosol	22.61	23.72
PGSC0003DMT400030966	Potato	cytosol, plasma membrane, plastid	24.02	23.01
PGSC0003DMT400064250	Potato	mitochondrion	19.78	22.91
PGSC0003DMT400063732	Potato	cytosol	22.92	22.78
PGSC0003DMT400053176	Potato	cytosol	13.66	22.31
PGSC0003DMT400053918	Potato	cytosol	19.0	22.04
PGSC0003DMT400091765	Potato	cytosol	19.15	17.28

Protein Annotations

EntrezGene:102598259	MapMan:11.5.2.6	MapMan:19.2.2.8.1.4.2	Gene3D:3.80.10.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	UniProt:M0ZT63	PFAM:PF00646	PFAM:PF13516
EnsemblPlantsGene:PGSC0003DMG400002914	PGSC:PGSC0003DMG400002914	EnsemblPlants:PGSC0003DMT400007545	PANTHER:PTHR44327	PANTHER:PTHR44327:SF1	SMART:SM00256
SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI00029605D6	RefSeq:XP_006345227.1	SEG:seg

Description

EIN3-binding F-box protein 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400002914]

Coordinates

chr12:-:2844416..2848113

Molecular Weight (calculated)

67762.7 Da

IEP (calculated)

7.300

GRAVY (calculated)

0.186

Length

637 amino acids

Sequence
(BLAST)

001: MPTLVNYSGD DEFYSGGSFC SADLGLMLSL GHADVYCPPR KRARISGPFV VEDRSKDPSL EILPDECLFE ILRRLPGGRE RGAAACVSKR WLTVLSSVRN
101: SEICRSKSYN NLNDAIMISK DEDLEVECDG YLTRCVEGKK ATDVRLAAIA VGTSTRGGLG KLSIRGSNSV RGITNVGLSA IAHGCPSLRV LSLWNVPSIG
201: DEGLLEVARE CRSLEKLDLS HCRSISNKGL VAIAENCPSL TSLTIESCPK IGNEGLQAIG RCCTKLQSLT IKDCPLVGDQ GVASLLSSGA SMLSKVKLHG
301: LNITDFSLAV IGHYGKLITN LNLCSLRNVS QKGFWVMGNA QGLQSLVSLT ITLCQGATDV GLEAVGKGCP NLKHMCIRKC CFVSDGGLVA FAKEAGSLES
401: LILEECNRIT QVGILNAVSN CRKLKSLSLV KCMGIKDLAL QTSMLSPCES LRSLSIRSCP GFGSTSLAMV GKLCPKLHQL DLSGLCGITD AGLLPLLENC
501: EGLVKVNLSD CLNLTDQVVL SLATRHGETL ELLNLDGCRK VTDASLVAIA DYCPLLNDLD VSKCAITDSG VAALSRGVQV NLQVLSLSGC SMVSNKSVPS
601: LKKLGENLLG LNLQHCSVSC SSVELLVEDL WRCDILS

Best Arabidopsis Sequence Match ( AT2G25490.1 )
(BLAST)

001: MSQIFSFAGE NDFYRRGAIY PNPKDASLLL SLGSFADVYF PPSKRSRVVA PTIFSAFEKK PVSIDVLPDE CLFEIFRRLS GPQERSACAF VSKQWLTLVS
101: SIRQKEIDVP SKITEDGDDC EGCLSRSLDG KKATDVRLAA IAVGTAGRGG LGKLSIRGSN SAKVSDLGLR SIGRSCPSLG SLSLWNVSTI TDNGLLEIAE
201: GCAQLEKLEL NRCSTITDKG LVAIAKSCPN LTELTLEACS RIGDEGLLAI ARSCSKLKSV SIKNCPLVRD QGIASLLSNT TCSLAKLKLQ MLNVTDVSLA
301: VVGHYGLSIT DLVLAGLSHV SEKGFWVMGN GVGLQKLNSL TITACQGVTD MGLESVGKGC PNMKKAIISK SPLLSDNGLV SFAKASLSLE SLQLEECHRV
401: TQFGFFGSLL NCGEKLKAFS LVNCLSIRDL TTGLPASSHC SALRSLSIRN CPGFGDANLA AIGKLCPQLE DIDLCGLKGI TESGFLHLIQ SSLVKINFSG
501: CSNLTDRVIS AITARNGWTL EVLNIDGCSN ITDASLVSIA ANCQILSDLD ISKCAISDSG IQALASSDKL KLQILSVAGC SMVTDKSLPA IVGLGSTLLG
601: LNLQQCRSIS NSTVDFLVER LYKCDILS

Arabidopsis Description

EBF1EIN3-binding F-box protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKK0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.