CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX76980
CDX80503
CDX87090
CDX88173
CDY19807
CDY35358

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20770.1	CDX76980	AT2G25490.1	14675532
AT3G20770.1	CDY35358	AT2G25490.1	14675532
AT3G20770.1	CDX76980	AT2G25490.1	14675533
AT3G20770.1	CDY35358	AT2G25490.1	14675533
AT3G20770.1	CDX80503	AT5G25350.1	14675532
AT3G20770.1	CDX87090	AT5G25350.1	14675532
AT3G20770.1	CDX88173	AT5G25350.1	14675532
AT3G20770.1	CDY19807	AT5G25350.1	14675532
AT3G20770.1	CDX80503	AT5G25350.1	14675533
AT3G20770.1	CDX87090	AT5G25350.1	14675533
AT3G20770.1	CDX88173	AT5G25350.1	14675533
AT3G20770.1	CDY19807	AT5G25350.1	14675533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19606	Canola	nucleus	92.2	97.61
Bra035746.1-P	Field mustard	nucleus	91.99	91.43
CDY60391	Canola	nucleus	69.61	79.76
AT3G20770.1	Thale cress	nucleus	86.04	66.72
CDY27563	Canola	nucleus	80.08	66.44
CDX82228	Canola	nucleus	72.69	65.43
CDY32390	Canola	nucleus	72.9	64.66
CDY38540	Canola	nucleus	59.34	51.33
CDX83250	Canola	nucleus	59.55	50.88
CDY70411	Canola	nucleus	16.22	47.02
KRG89856	Soybean	nucleus	58.32	45.51
KRH18695	Soybean	nucleus	57.49	45.09
CDY46568	Canola	nucleus	15.4	44.64
KRH73465	Soybean	nucleus	55.85	44.3
KRH14682	Soybean	nucleus	55.24	44.1
PGSC0003DMT400022477	Potato	nucleus	55.03	43.65
Solyc06g073720.1.1	Tomato	nucleus	54.62	43.61
KRH18696	Soybean	nucleus	54.41	42.88
Solyc01g009170.2.1	Tomato	nucleus	53.8	42.67
PGSC0003DMT400015148	Potato	nucleus	53.18	42.46
Solyc06g073730.1.1	Tomato	nucleus	51.95	41.82
VIT_06s0009g01380.t01	Wine grape	nucleus	51.54	41.15
PGSC0003DMT400015145	Potato	nucleus	50.1	40.73
GSMUA_Achr6P15930_001	Banana	nucleus	38.81	36.49
GSMUA_Achr10P...	Banana	nucleus	38.19	35.63
CDX81161	Canola	nucleus	12.94	32.81
GSMUA_Achr5P27670_001	Banana	nucleus	41.68	32.38
TraesCS4A01G129400.1	Wheat	nucleus	36.14	32.18
GSMUA_Achr11P...	Banana	nucleus	39.01	32.09
Os02t0689132-00	Rice	nucleus	11.5	31.64
GSMUA_Achr8P21550_001	Banana	nucleus	41.07	31.55
GSMUA_Achr9P17080_001	Banana	nucleus	40.25	31.51
GSMUA_Achr2P11540_001	Banana	nucleus	39.01	31.46
TraesCS4B01G175100.1	Wheat	nucleus	41.89	31.38
GSMUA_Achr3P09440_001	Banana	nucleus	33.88	31.19
EER94933	Sorghum	nucleus	41.07	31.1
TraesCS4D01G177000.1	Wheat	nucleus	41.48	31.03
HORVU4Hr1G051680.1	Barley	nucleus	41.27	30.88
Zm00001d047563_P001	Maize	nucleus	40.66	30.84
Zm00001d028974_P001	Maize	nucleus	40.66	30.6
Zm00001d007188_P001	Maize	nucleus	36.96	30.25
CDY09099	Canola	nucleus	24.02	30.15
OQU90496	Sorghum	nucleus	35.93	29.46
TraesCS2A01G099900.1	Wheat	nucleus	35.11	27.67
TraesCS2D01G099400.1	Wheat	nucleus	35.11	27.58
TraesCS2B01G116900.1	Wheat	nucleus	34.29	26.98
Zm00001d022530_P001	Maize	nucleus	24.85	26.65
CDY08821	Canola	nucleus	19.3	26.48
CDY59518	Canola	nucleus	26.69	25.54
CDX92408	Canola	nucleus	26.08	25.45
CDY14539	Canola	nucleus	19.1	25.0
CDX78369	Canola	nucleus	15.61	23.1
CDY40078	Canola	nucleus	20.94	22.52
CDX85778	Canola	nucleus	20.94	22.42
CDY11093	Canola	nucleus	25.46	21.95
CDY47740	Canola	nucleus	24.64	20.62
CDY60137	Canola	nucleus	24.85	20.61
CDX73009	Canola	nucleus	24.64	20.51

Protein Annotations

EnsemblPlants:CDY06379	EnsemblPlantsGene:GSBRNA2T00122339001	ncoils:Coil	PANTHER:PTHR33305	PANTHER:PTHR33305:SF1	PFAM:PF04873
ProteinID:CDY06379	ProteinID:CDY06379.1	SEG:seg	UniParc:UPI0004EE61EA	MapMan:11.5.2.4	MapMan:15.5.11

Description

BnaC05g31510D

Coordinates

chrLK031969:-:103005..105598

Molecular Weight (calculated)

55441.8 Da

IEP (calculated)

4.720

GRAVY (calculated)

-0.870

Length

487 amino acids

Sequence
(BLAST)

001: MIYRETPQRN ASNKMTMMFN EMGMCGNMDF FSPASLGEVD FCPAPTHPEP DSVVDDDYTD DEIDVDELER RMWRDKMRLK RLKEQDKSGS KEGVDAAKQR
101: QSQEQARRKK MSRAQDGILK YMLKMMEVCK AQGFVYGIIP ENGKPVTGAS DNLREWWKDK VRFDRNGPAA ISKYQAENNI PGVREGSNPI GPTPHTLQEL
201: QDTTLGELYP ESCPPVSLSG GGSCSLLMND CSQYDVDGLE KETRYEVEEL KPEKEEVPSE FMRKRKPNRD LNAMMDRTIF TCENTGCAHG DVSRGFLDRN
301: SRDNHQFVCP HRDSGLPYGA PSRFHVSEPI DLTGIGVPED GQKMISELMS MYDRNVQSNQ NQTSMVTESQ LLQPTVQNHQ EHLQFQGNMV EGSFFEDLNI
401: PNRVNNQMFF QGNNNNSGFK YDTAHTNNNN FEAAHNNASS NRFQLVFDSP PFDMASFDYR DDMSMPGVVG TMDGMQQQKQ QDVSIWF

Best Arabidopsis Sequence Match ( AT1G73730.1 )
(BLAST)

001: MGDLAMSVAD IRMENEPDDL ASDNVAEIDV SDEEIDADDL ERRMWKDRVR LKRIKERQKA GSQGAQTKET PKKISDQAQR KKMSRAQDGI LKYMLKLMEV
101: CKVRGFVYGI IPEKGKPVSG SSDNIRAWWK EKVKFDKNGP AAIAKYEEEC LAFGKSDGNR NSQFVLQDLQ DATLGSLLSS LMQHCDPPQR KYPLEKGTPP
201: PWWPTGNEEW WVKLGLPKSQ SPPYRKPHDL KKMWKVGVLT AVINHMLPDI AKIKRHVRQS KCLQDKMTAK ESAIWLAVLN QEESLIQQPS SDNGNSNVTE
301: THRRGNNADR RKPVVNSDSD YDVDGTEEAS GSVSSKDSRR NQIQKEQPTA ISHSVRDQDK AEKHRRRKRP RIRSGTVNRQ EEEQPEAQQR NILPDMNHVD
401: APLLEYNING THQEDDVVDP NIALGPEDNG LELVVPEFNN NYTYLPLVNE QTMMPVDERP MLYGPNPNQE LQFGSGYNFY NPSAVFVHNQ EDDILHTQIE
501: MNTQAPPHNS GFEEAPGGVL QPLGLLGNED GVTGSELPQY QSGILSPLTD LDFDYGGFGD DFSWFGA

Arabidopsis Description

EIL3SLIM1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZZ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.