Factsheet for VIT_06s0009g01380.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g05470.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27050.1	VIT_04s0008g05470.t01	AT2G25490.1	14675533
AT2G27050.1	VIT_04s0008g05470.t01	AT5G25350.1	14675533
AT3G20770.1	VIT_04s0008g05470.t01	AT2G25490.1	14675532
AT3G20770.1	VIT_04s0008g05470.t01	AT2G25490.1	14675533
AT3G20770.1	VIT_04s0008g05470.t01	AT5G25350.1	14675532
AT3G20770.1	VIT_04s0008g05470.t01	AT5G25350.1	14675533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18695	Soybean	nucleus	67.38	66.18
KRH14682	Soybean	nucleus	65.74	65.74
KRG89856	Soybean	nucleus	66.89	65.38
KRH73465	Soybean	nucleus	65.74	65.31
KRH18696	Soybean	nucleus	65.41	64.56
VIT_13s0047g00250.t01	Wine grape	nucleus	64.92	64.29
Solyc06g073720.1.1	Tomato	nucleus	63.61	63.61
PGSC0003DMT400022477	Potato	nucleus	63.93	63.52
PGSC0003DMT400015148	Potato	nucleus	63.11	63.11
Solyc06g073730.1.1	Tomato	nucleus	61.97	62.48
Solyc01g009170.2.1	Tomato	nucleus	62.79	62.38
PGSC0003DMT400015145	Potato	nucleus	60.82	61.94
CDX82228	Canola	nucleus	54.75	61.74
CDY32390	Canola	nucleus	55.25	61.38
CDY38540	Canola	nucleus	55.74	60.39
CDX83250	Canola	nucleus	56.23	60.18
Bra000528.1-P	Field mustard	nucleus	56.07	59.89
AT2G27050.1	Thale cress	nucleus	57.21	59.76
Bra001802.1-P	Field mustard	nucleus	56.39	59.21
CDY27563	Canola	nucleus	56.72	58.94
AT3G20770.1	Thale cress	nucleus	60.0	58.28
CDY19606	Canola	nucleus	39.34	52.17
CDY06379	Canola	nucleus	41.15	51.54
CDY60391	Canola	nucleus	35.9	51.53
Bra035746.1-P	Field mustard	nucleus	41.15	51.22
Bra023927.1-P	Field mustard	nucleus	37.05	51.02
VIT_00s0357g00120.t01	Wine grape	nucleus	33.44	42.15
Os02t0689132-00	Rice	nucleus	11.97	41.24
VIT_06s0004g01610.t01	Wine grape	nucleus	38.2	37.4

Protein Annotations

Gene3D:1.10.3180.10	EntrezGene:100256432	wikigene:100256432	MapMan:11.5.2.4	MapMan:15.5.11	ProteinID:CCB49163
ProteinID:CCB49163.1	ncoils:Coil	InterPro:Ethylene_insens-like_DNA-bd	UniProt:F6HA32	EMBL:FN595504	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009873	GO:GO:0009987
GO:GO:0071281	InterPro:IPR023278	EntrezGene:LOC100256432	wikigene:LOC100256432	PFAM:PF04873	PANTHER:PTHR33305
PANTHER:PTHR33305:SF1	SUPFAM:SSF116768	UniParc:UPI00015C92F5	ArrayExpress:VIT_06s0009g01380	EnsemblPlantsGene:VIT_06s0009g01380	EnsemblPlants:VIT_06s0009g01380.t01
unigene:Vvi.19555	RefSeq:XP_002275284	RefSeq:XP_002275284.2	RefSeq:XP_010651613.1	SEG:seg	:

Description

No Description!

Coordinates

chr6:+:13082065..13084153

Molecular Weight (calculated)

69428.2 Da

IEP (calculated)

6.386

GRAVY (calculated)

-0.746

Length

610 amino acids

Sequence
(BLAST)

001: MMMFDEMGIC GNLEFMSVPF MEGDMAASQP EQVAPVDDEY TDEEMDVDEL QRRMWRDKLR LKRLKEQKED QNGADTVKQR QSQEQARRKK MSRAQDGILK
101: YMLKMMEVCK AQGFVYGIIP EKGKPVSGAS DNLREWWKDK VRFDRNGPAA IAKYQADNLI PGKQEGCNSV GPTSHTLHEL QDTTLGSLLS ALMQHCEPPQ
201: RRFPLEKGIP PPWWPTGNEE WWPQLGSPKD QGPPPYKKPH DLKKAWKVSV LTAVMKHMSP DISKIRKLVR QSKCLQDKMT AKESATWLAI INQEEALARK
301: LYPDYRPPLS SASGSGSFSI KDCGEYDVEG VQDELSFEIQ ECKPDSSNFS NLNVEKMSPR LPVPQLPYPM KGEVVTNLDF LHKRKPSHDL EMMMDHKIYT
401: CEFLQCPHSE PQFGFHDRIS RDNHQLTCSY RSNSSEFGML NLHVNEVKPV AFPLPFGQPK PAAPAANSAS ASFDLSGLGV PEDGQKMIGD LMSFYDTNIQ
501: GSKVSNPRSI AVTNDQNLQH PKRQHHQNNS FHGFLQESNM THNHHMFPRE ESQFDRSKLL NSRFETSPNE NAFQFIYGPA FDLSSIDYVE DIPATTATDI
601: SSKQDASIWY

Best Arabidopsis Sequence Match ( AT3G20770.1 )
(BLAST)

001: MMFNEMGMCG NMDFFSSGSL GEVDFCPVPQ AEPDSIVEDD YTDDEIDVDE LERRMWRDKM RLKRLKEQDK GKEGVDAAKQ RQSQEQARRK KMSRAQDGIL
101: KYMLKMMEVC KAQGFVYGII PENGKPVTGA SDNLREWWKD KVRFDRNGPA AITKYQAENN IPGIHEGNNP IGPTPHTLQE LQDTTLGSLL SALMQHCDPP
201: QRRFPLEKGV PPPWWPNGKE DWWPQLGLPK DQGPAPYKKP HDLKKAWKVG VLTAVIKHMF PDIAKIRKLV RQSKCLQDKM TAKESATWLA IINQEESLAR
301: ELYPESCPPL SLSGGSCSLL MNDCSQYDVE GFEKESHYEV EELKPEKVMN SSNFGMVAKM HDFPVKEEVP AGNSEFMRKR KPNRDLNTIM DRTVFTCENL
401: GCAHSEISRG FLDRNSRDNH QLACPHRDSR LPYGAAPSRF HVNEVKPVVG FPQPRPVNSV AQPIDLTGIV PEDGQKMISE LMSMYDRNVQ SNQTSMVMEN
501: QSVSLLQPTV HNHQEHLQFP GNMVEGSFFE DLNIPNRANN NNSSNNQTFF QGNNNNNNVF KFDTADHNNF EAAHNNNNNS SGNRFQLVFD STPFDMASFD
601: YRDDMSMPGV VGTMDGMQQK QQDVSIWF

Arabidopsis Description

EIN3Protein ETHYLENE INSENSITIVE 3 [Source:UniProtKB/Swiss-Prot;Acc:O24606]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.