CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH05167
KRH15886
KRH52439
KRH61771

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27050.1	KRH05167	AT2G25490.1	14675533
AT2G27050.1	KRH15886	AT2G25490.1	14675533
AT2G27050.1	KRH52439	AT2G25490.1	14675533
AT2G27050.1	KRH61771	AT2G25490.1	14675533
AT2G27050.1	KRH05167	AT5G25350.1	14675533
AT2G27050.1	KRH15886	AT5G25350.1	14675533
AT2G27050.1	KRH52439	AT5G25350.1	14675533
AT2G27050.1	KRH61771	AT5G25350.1	14675533
AT3G20770.1	KRH05167	AT2G25490.1	14675532
AT3G20770.1	KRH15886	AT2G25490.1	14675532
AT3G20770.1	KRH52439	AT2G25490.1	14675532
AT3G20770.1	KRH61771	AT2G25490.1	14675532
AT3G20770.1	KRH05167	AT2G25490.1	14675533
AT3G20770.1	KRH15886	AT2G25490.1	14675533
AT3G20770.1	KRH52439	AT2G25490.1	14675533
AT3G20770.1	KRH61771	AT2G25490.1	14675533
AT3G20770.1	KRH05167	AT5G25350.1	14675532
AT3G20770.1	KRH15886	AT5G25350.1	14675532
AT3G20770.1	KRH52439	AT5G25350.1	14675532
AT3G20770.1	KRH61771	AT5G25350.1	14675532
AT3G20770.1	KRH05167	AT5G25350.1	14675533
AT3G20770.1	KRH15886	AT5G25350.1	14675533
AT3G20770.1	KRH52439	AT5G25350.1	14675533
AT3G20770.1	KRH61771	AT5G25350.1	14675533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18695	Soybean	nucleus	92.47	92.91
KRH18696	Soybean	nucleus	81.89	82.69
KRH14682	Soybean	nucleus	79.97	81.8
KRH73465	Soybean	nucleus	79.49	80.78
CDX82228	Canola	nucleus	58.81	67.84
PGSC0003DMT400022477	Potato	nucleus	66.67	67.75
Solyc06g073720.1.1	Tomato	nucleus	66.03	67.54
VIT_06s0009g01380.t01	Wine grape	nucleus	65.38	66.89
PGSC0003DMT400015148	Potato	nucleus	65.06	66.56
CDY32390	Canola	nucleus	58.49	66.48
Solyc06g073730.1.1	Tomato	nucleus	64.42	66.45
PGSC0003DMT400015145	Potato	nucleus	63.78	66.44
Solyc01g009170.2.1	Tomato	nucleus	65.22	66.29
Bra001802.1-P	Field mustard	nucleus	61.38	65.92
AT3G20770.1	Thale cress	nucleus	65.87	65.45
Bra000528.1-P	Field mustard	nucleus	59.62	65.15
AT2G27050.1	Thale cress	nucleus	60.74	64.9
CDY38540	Canola	nucleus	58.49	64.83
CDX83250	Canola	nucleus	59.13	64.74
CDY27563	Canola	nucleus	60.74	64.57
CDY19606	Canola	nucleus	44.07	59.78
Bra035746.1-P	Field mustard	nucleus	45.99	58.57
CDY06379	Canola	nucleus	45.51	58.32
CDY60391	Canola	nucleus	39.58	58.12
Bra023927.1-P	Field mustard	nucleus	41.03	57.79
GSMUA_Achr6P15930_001	Banana	nucleus	46.96	56.56
GSMUA_Achr10P...	Banana	nucleus	46.15	55.17
GSMUA_Achr5P27670_001	Banana	nucleus	51.76	51.52
GSMUA_Achr3P09440_001	Banana	nucleus	43.43	51.23
GSMUA_Achr2P11540_001	Banana	nucleus	48.88	50.5
TraesCS4A01G129400.1	Wheat	nucleus	44.23	50.46
GSMUA_Achr8P21550_001	Banana	nucleus	50.64	49.84
GSMUA_Achr9P17080_001	Banana	nucleus	49.04	49.2
GSMUA_Achr11P...	Banana	nucleus	46.31	48.82
EER94933	Sorghum	nucleus	49.52	48.06
Zm00001d047563_P001	Maize	nucleus	48.72	47.35
Zm00001d028974_P001	Maize	nucleus	49.04	47.3
HORVU4Hr1G051680.1	Barley	nucleus	49.04	47.0
TraesCS4B01G175100.1	Wheat	nucleus	48.88	46.92
TraesCS4D01G177000.1	Wheat	nucleus	48.72	46.7
Zm00001d022530_P001	Maize	nucleus	33.97	46.7
KRH31276	Soybean	nucleus	29.17	45.73
Zm00001d007188_P001	Maize	nucleus	41.99	44.03
OQU90496	Sorghum	nucleus	41.83	43.94
KRH43217	Soybean	nucleus	31.25	43.05
TraesCS2D01G099400.1	Wheat	nucleus	42.31	42.58
KRG97597	Soybean	nucleus	31.57	42.46
TraesCS2A01G099900.1	Wheat	nucleus	41.83	42.23
KRH59382	Soybean	nucleus	31.25	42.21
TraesCS2B01G116900.1	Wheat	nucleus	41.83	42.16
Os02t0689132-00	Rice	nucleus	11.86	41.81
KRH23176	Soybean	nucleus	38.46	40.61
KRH10163	Soybean	nucleus	38.3	40.51
KRH56267	Soybean	nucleus	36.38	29.63

Protein Annotations

Gene3D:1.10.3180.10	EntrezGene:100777079	MapMan:11.5.2.4	MapMan:15.5.11	UniProt:A0A0R0E717	EMBL:ACUP02012298
ncoils:Coil	InterPro:Ethylene_insens-like_DNA-bd	EnsemblPlantsGene:GLYMA_20G051500	GO:GO:0003674	GO:GO:0003700	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR023278	ProteinID:KRG89855.1	EnsemblPlants:KRG89856
ProteinID:KRG89856	ProteinID:KRG89856.1	PFAM:PF04873	SUPFAM:SSF116768	UniParc:UPI00018C6C22	SEG:seg

Description

hypothetical protein

Coordinates

chr20:-:11508609..11512125

Molecular Weight (calculated)

70655.6 Da

IEP (calculated)

5.543

GRAVY (calculated)

-0.751

Length

624 amino acids

Sequence
(BLAST)

001: MMMFEDMGFC GDLDMFSAPL GEGDITTRQT EPEVIVEDDY SDEEIDVDEL ERRMWRDKMR LKRLKEQSKP KEGIDAVKQR QSQEQARRKK MSRAQDGILK
101: YMLKMMEVCK AQGFVYGIIP EKGKPVTGAS DNLREWWKDK VRFDRNGPAA ITKYQADNAI PGKNDGCNPI GPTPHTLQEL QDTTLGSLLS ALMQHCDPPQ
201: RRYPLEKGVP PPWWPNGNEE WWPQIGLPKD QGPPPYKKPH DLKKAWKVGV LTAVIKHMSP DIAKIRKLVR QSKCLQDKMT AKESATWLAI INQEEALARE
301: LYPDYCPPLA ASSGGSGSMV INDCNEYDVE GGDDEPNFDV EDRKPENLHA PNLGMDRMMG RLPSFPIKGE AVTNLDFIRK RKISGDFNMI MDQKIYTCEQ
401: PQCPYSEIHH GFADRNSRDN HRLSCPYRGS ASTDYGGSNF HVNEAKPVIF PQQSFVQPKP TTTPSVVNLV PSVIDLTGLG VPEDGKKMIT DLMSIYDTNV
501: QSNKNLSSSN HVSAENPNLP QPGIQQQHDN FFRSQGISME GNFFEEANMS NNNHHMFARE EGQFDRFKAL NAPPFETNHN NNNFHLMFGS PCDLASFDFK
601: EDMQGGVVGM DALQKQPDIS IWYQ

Best Arabidopsis Sequence Match ( AT3G20770.1 )
(BLAST)

001: MMFNEMGMCG NMDFFSSGSL GEVDFCPVPQ AEPDSIVEDD YTDDEIDVDE LERRMWRDKM RLKRLKEQDK GKEGVDAAKQ RQSQEQARRK KMSRAQDGIL
101: KYMLKMMEVC KAQGFVYGII PENGKPVTGA SDNLREWWKD KVRFDRNGPA AITKYQAENN IPGIHEGNNP IGPTPHTLQE LQDTTLGSLL SALMQHCDPP
201: QRRFPLEKGV PPPWWPNGKE DWWPQLGLPK DQGPAPYKKP HDLKKAWKVG VLTAVIKHMF PDIAKIRKLV RQSKCLQDKM TAKESATWLA IINQEESLAR
301: ELYPESCPPL SLSGGSCSLL MNDCSQYDVE GFEKESHYEV EELKPEKVMN SSNFGMVAKM HDFPVKEEVP AGNSEFMRKR KPNRDLNTIM DRTVFTCENL
401: GCAHSEISRG FLDRNSRDNH QLACPHRDSR LPYGAAPSRF HVNEVKPVVG FPQPRPVNSV AQPIDLTGIV PEDGQKMISE LMSMYDRNVQ SNQTSMVMEN
501: QSVSLLQPTV HNHQEHLQFP GNMVEGSFFE DLNIPNRANN NNSSNNQTFF QGNNNNNNVF KFDTADHNNF EAAHNNNNNS SGNRFQLVFD STPFDMASFD
601: YRDDMSMPGV VGTMDGMQQK QQDVSIWF

Arabidopsis Description

EIN3Protein ETHYLENE INSENSITIVE 3 [Source:UniProtKB/Swiss-Prot;Acc:O24606]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.