CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH13720
KRH43737

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73730.1	KRH13720	AT1G56160.1	18218967
AT1G73730.1	KRH43737	AT1G56160.1	18218967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10163	Soybean	nucleus	93.91	94.07
HORVU0Hr1G011440.1	Barley	nucleus	51.78	79.07
VIT_06s0004g01610.t01	Wine grape	nucleus	64.97	61.64
AT1G73730.1	Thale cress	nucleus	51.95	54.14
Bra008110.1-P	Field mustard	nucleus	48.73	53.43
Bra015970.1-P	Field mustard	nucleus	52.96	53.32
CDY60137	Canola	nucleus	52.96	53.32
CDX73009	Canola	nucleus	52.62	53.16
Bra003831.1-P	Field mustard	nucleus	48.05	51.45
CDY11093	Canola	nucleus	49.07	51.33
CDY47740	Canola	nucleus	48.9	49.66
PGSC0003DMT400055102	Potato	nucleus	55.16	48.8
Solyc01g014480.2.1	Tomato	nucleus	55.67	48.74
PGSC0003DMT400076890	Potato	nucleus	54.99	48.01
Solyc01g006650.1.1	Tomato	nucleus	53.47	47.88
GSMUA_Achr9P27680_001	Banana	nucleus	43.65	42.3
KRH31276	Soybean	nucleus	28.43	42.21
GSMUA_Achr8P25580_001	Banana	nucleus	43.99	42.21
Os09t0490200-01	Rice	nucleus	43.15	41.73
GSMUA_Achr3P11160_001	Banana	nucleus	40.27	41.68
TraesCS5D01G273600.1	Wheat	nucleus	42.81	41.34
Zm00001d020939_P001	Maize	nucleus	42.3	41.05
EER99089	Sorghum	nucleus	42.13	40.89
TraesCS5B01G265400.1	Wheat	nucleus	38.92	39.52
TraesCS5A01G265700.1	Wheat	nucleus	38.58	39.11
TraesCS7D01G244600.1	Wheat	nucleus	40.1	38.6
TraesCS7A01G246100.1	Wheat	nucleus	40.1	38.6
KRG89856	Soybean	nucleus	40.61	38.46
Os08t0508700-01	Rice	nucleus	40.27	38.45
KRH43217	Soybean	nucleus	29.44	38.41
KRH14682	Soybean	nucleus	39.59	38.36
TraesCS7B01G145400.1	Wheat	nucleus	39.76	38.34
KRH59382	Soybean	nucleus	29.95	38.31
OQU80929	Sorghum	nucleus	39.93	38.19
KRH73465	Soybean	nucleus	39.59	38.11
KRH18695	Soybean	nucleus	39.93	38.0
KRH18696	Soybean	nucleus	39.42	37.7
Zm00001d031445_P001	Maize	nucleus	39.76	37.18
KRG97597	Soybean	nucleus	28.93	36.85
KRH56267	Soybean	nucleus	31.98	24.67

Protein Annotations

Gene3D:1.10.3180.10	EntrezGene:100807406	MapMan:11.5.2.4	MapMan:15.5.11	EMBL:ACUP02008457	ncoils:Coil
InterPro:Ethylene_insens-like_DNA-bd	EnsemblPlantsGene:GLYMA_13G342500	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009873	GO:GO:0009987	GO:GO:0071281	InterPro:IPR023278	UniProt:K7M3I6
EnsemblPlants:KRH23176	ProteinID:KRH23176	ProteinID:KRH23176.1	PFAM:PF04873	PANTHER:PTHR33305	PANTHER:PTHR33305:SF11
SUPFAM:SSF116768	UniParc:UPI000233AF7A	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:43396036..43399003

Molecular Weight (calculated)

66056.6 Da

IEP (calculated)

6.028

GRAVY (calculated)

-0.865

Length

591 amino acids

Sequence
(BLAST)

001: MGEMEEIGAD VCSDIEVDDI RCPNIAEKDV SDEEIEAEEL ERRMWKDRIK LKRLKEKQKL EAQQAAEKQK PRQSSDQARR KKMSRAQDGI LKYMLKLMEV
101: CKARGFVYGI IPEKGKPVSG SSDNIRAWWK EKVRFDKNGP AAIAKYEADC LAMSEADNSR NGNSQSILQD LQDATLGSLL SALMQHCDPP QRKYPLEKGI
201: PPPWWPNGNE DWWSQLNLPH GQSPPYKKPH DLKKMWKVGV LTAVIKHMSP NIAKIRKHVR QSKCLQDKMT AKESAIWLGV LSQEEALIRQ PSSDNGTSGI
301: TGVPPGVPVE NRQAATSSAS NYDVDGTDDG IGSVSSKENR RNQFMDTEPS DNLRRVRKSG QDTDQAKKQP RPKKPRRAND KPPAQSDNEI SLVEPRSNGL
401: NMNPTEAQMG GVQIHGNEQS NETDSAARPL ERGLEVSAQL PAPEVDHYSY LHTNNLISSA SMYMSGRPMH YPELQNPDMH HETTYNLYNP AAGYEPGQDG
501: QQLHSANNEA VRPENVVVSL QGVHMKGDGI NGGDLQYFGK DAFQNDLDRP MDHSFFGSPL SSMSLDFGGL GSPFHLDDFM CDDEMIQYFG A

Best Arabidopsis Sequence Match ( AT1G73730.1 )
(BLAST)

001: MGDLAMSVAD IRMENEPDDL ASDNVAEIDV SDEEIDADDL ERRMWKDRVR LKRIKERQKA GSQGAQTKET PKKISDQAQR KKMSRAQDGI LKYMLKLMEV
101: CKVRGFVYGI IPEKGKPVSG SSDNIRAWWK EKVKFDKNGP AAIAKYEEEC LAFGKSDGNR NSQFVLQDLQ DATLGSLLSS LMQHCDPPQR KYPLEKGTPP
201: PWWPTGNEEW WVKLGLPKSQ SPPYRKPHDL KKMWKVGVLT AVINHMLPDI AKIKRHVRQS KCLQDKMTAK ESAIWLAVLN QEESLIQQPS SDNGNSNVTE
301: THRRGNNADR RKPVVNSDSD YDVDGTEEAS GSVSSKDSRR NQIQKEQPTA ISHSVRDQDK AEKHRRRKRP RIRSGTVNRQ EEEQPEAQQR NILPDMNHVD
401: APLLEYNING THQEDDVVDP NIALGPEDNG LELVVPEFNN NYTYLPLVNE QTMMPVDERP MLYGPNPNQE LQFGSGYNFY NPSAVFVHNQ EDDILHTQIE
501: MNTQAPPHNS GFEEAPGGVL QPLGLLGNED GVTGSELPQY QSGILSPLTD LDFDYGGFGD DFSWFGA

Arabidopsis Description

EIL3SLIM1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZZ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.