Factsheet for Solyc01g014480.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc10g005550.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73730.1	Solyc10g005550.1.1	AT1G56160.1	18218967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076890	Potato	nucleus	94.96	94.68
HORVU0Hr1G011440.1	Barley	nucleus	40.3	70.28
Solyc01g006650.1.1	Tomato	nucleus	65.78	67.27
VIT_06s0004g01610.t01	Wine grape	nucleus	53.33	57.78
KRH23176	Soybean	nucleus	48.74	55.67
KRH10163	Soybean	nucleus	48.59	55.59
AT1G73730.1	Thale cress	nucleus	44.44	52.91
Bra008110.1-P	Field mustard	nucleus	41.33	51.76
CDY60137	Canola	nucleus	44.59	51.28
Bra015970.1-P	Field mustard	nucleus	44.59	51.28
CDX73009	Canola	nucleus	44.3	51.11
Bra003831.1-P	Field mustard	nucleus	40.44	49.46
CDY11093	Canola	nucleus	41.33	49.38
CDY47740	Canola	nucleus	41.48	48.11
GSMUA_Achr3P11160_001	Banana	nucleus	34.96	41.33
GSMUA_Achr9P27680_001	Banana	nucleus	37.33	41.31
GSMUA_Achr8P25580_001	Banana	nucleus	37.19	40.75
Zm00001d020939_P001	Maize	nucleus	36.3	40.23
EER99089	Sorghum	nucleus	36.15	40.07
TraesCS5D01G273600.1	Wheat	nucleus	36.15	39.87
Os09t0490200-01	Rice	nucleus	35.41	39.12
TraesCS7D01G244600.1	Wheat	nucleus	34.96	38.44
TraesCS5B01G265400.1	Wheat	nucleus	32.89	38.14
TraesCS7A01G246100.1	Wheat	nucleus	34.67	38.11
OQU80929	Sorghum	nucleus	34.81	38.03
TraesCS7B01G145400.1	Wheat	nucleus	34.52	38.01
TraesCS5A01G265700.1	Wheat	nucleus	32.74	37.91
Os08t0508700-01	Rice	nucleus	34.52	37.64
Solyc01g009170.2.1	Tomato	nucleus	33.33	36.65
Solyc01g096810.2.1	Tomato	nucleus	32.3	36.27
Zm00001d031445_P001	Maize	nucleus	33.93	36.23
Solyc06g073730.1.1	Tomato	nucleus	32.3	36.03
Solyc03g096630.1.1	Tomato	nucleus	23.11	35.94
Solyc06g073720.1.1	Tomato	nucleus	31.85	35.25
Solyc04g054840.1.1	Tomato	nucleus	23.11	31.01

Protein Annotations

Gene3D:1.10.3180.10	MapMan:11.5.2.4	MapMan:15.5.11	ncoils:Coil	InterPro:Ethylene_insens-like_DNA-bd	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009873	GO:GO:0009987
GO:GO:0071281	InterPro:IPR023278	UniProt:K4AU85	PFAM:PF04873	PANTHER:PTHR33305	PANTHER:PTHR33305:SF11
SUPFAM:SSF116768	EnsemblPlantsGene:Solyc01g014480.2	EnsemblPlants:Solyc01g014480.2.1	UniParc:UPI0002762312	SEG:seg	:

Description

No Description!

Coordinates

chr1:-:13959370..13962121

Molecular Weight (calculated)

76076.7 Da

IEP (calculated)

6.404

GRAVY (calculated)

-0.910

Length

675 amino acids

Sequence
(BLAST)

001: MAVMDEIGID ISSDIEVDDI RCDNIAEKDV SDEEIDPEEL ERRMWKDRVK LKRLKERQKI AAQQAAEKQK NKQTTDQARR KKMSRAQDGI LKYMLKLMEV
101: CKARGFVYGI IPEKGKPVSG SSDNIRAWWK EKVKFDKNGP AAIAKYEAEC HSKGEGISNQ NGNPQSVLQD LQDATLGSLL SSLMQHCDPP QRKYPLEKGV
201: SPPWWPSGND EWWVKMGLPK GQKPPYKKPH DLKKMFKVGV LTAVIKHMSP DIAKIRRLVR QSKCLQDKMT AKESSIWLAV LSREESTIRL QTNDNGSSSI
301: SEAPIRGHGD KKKSSVDSDS DYDVDDVNVS VSSRDERRNE PLDARPLTDV PQSHQSKEQG DGQRRRRKRA RSNFQQTQLS PSEQQPYDVA RNSLPDMNNA
401: NAQFSGYIAN ESQPENNMMV PRKSVERNSE GQSDLPLEES NLPMVPSANA VSTEETFVGN GPSIYPMLEN SEVVPYESRF HLGTQDSVVQ RQLHDTQLQS
501: RPQFSGMNNE PPNSIFHYGP PNNGLHNGSQ SSVLHHELQY SGFTHGSQYS NLHKPTVYQY FTPSAEFGSA HEEQQSHLAF GQPQIKPQDS GVRSAVLHGD
601: RNGMSREDHH YGKDAFQNDH DRPAEMHFAS PITSGSPDYA RLSSPFNFEL DVPSPLDTGD LELFLDEDVM TFFAS

Best Arabidopsis Sequence Match ( AT1G73730.1 )
(BLAST)

001: MGDLAMSVAD IRMENEPDDL ASDNVAEIDV SDEEIDADDL ERRMWKDRVR LKRIKERQKA GSQGAQTKET PKKISDQAQR KKMSRAQDGI LKYMLKLMEV
101: CKVRGFVYGI IPEKGKPVSG SSDNIRAWWK EKVKFDKNGP AAIAKYEEEC LAFGKSDGNR NSQFVLQDLQ DATLGSLLSS LMQHCDPPQR KYPLEKGTPP
201: PWWPTGNEEW WVKLGLPKSQ SPPYRKPHDL KKMWKVGVLT AVINHMLPDI AKIKRHVRQS KCLQDKMTAK ESAIWLAVLN QEESLIQQPS SDNGNSNVTE
301: THRRGNNADR RKPVVNSDSD YDVDGTEEAS GSVSSKDSRR NQIQKEQPTA ISHSVRDQDK AEKHRRRKRP RIRSGTVNRQ EEEQPEAQQR NILPDMNHVD
401: APLLEYNING THQEDDVVDP NIALGPEDNG LELVVPEFNN NYTYLPLVNE QTMMPVDERP MLYGPNPNQE LQFGSGYNFY NPSAVFVHNQ EDDILHTQIE
501: MNTQAPPHNS GFEEAPGGVL QPLGLLGNED GVTGSELPQY QSGILSPLTD LDFDYGGFGD DFSWFGA

Arabidopsis Description

EIL3SLIM1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZZ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.