Factsheet for Solyc01g006650.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc10g005550.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73730.1	Solyc10g005550.1.1	AT1G56160.1	18218967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055102	Potato	nucleus	91.82	90.72
HORVU0Hr1G011440.1	Barley	nucleus	40.15	68.48
Solyc01g014480.2.1	Tomato	nucleus	67.27	65.78
KRH10163	Soybean	nucleus	48.48	54.24
KRH23176	Soybean	nucleus	47.88	53.47
VIT_06s0004g01610.t01	Wine grape	nucleus	50.45	53.45
AT1G73730.1	Thale cress	nucleus	42.88	49.91
Bra008110.1-P	Field mustard	nucleus	40.3	49.35
CDX73009	Canola	nucleus	42.88	48.38
Bra015970.1-P	Field mustard	nucleus	42.88	48.21
CDY60137	Canola	nucleus	42.88	48.21
Bra003831.1-P	Field mustard	nucleus	39.39	47.1
CDY11093	Canola	nucleus	40.3	47.08
CDY47740	Canola	nucleus	40.3	45.7
GSMUA_Achr3P11160_001	Banana	nucleus	35.45	40.98
GSMUA_Achr9P27680_001	Banana	nucleus	37.12	40.16
GSMUA_Achr8P25580_001	Banana	nucleus	36.82	39.45
TraesCS5D01G273600.1	Wheat	nucleus	36.52	39.38
Zm00001d020939_P001	Maize	nucleus	36.06	39.08
Os09t0490200-01	Rice	nucleus	36.06	38.95
EER99089	Sorghum	nucleus	35.76	38.75
TraesCS7A01G246100.1	Wheat	nucleus	35.45	38.11
TraesCS7D01G244600.1	Wheat	nucleus	35.45	38.11
TraesCS7B01G145400.1	Wheat	nucleus	35.15	37.85
TraesCS5B01G265400.1	Wheat	nucleus	33.18	37.63
TraesCS5A01G265700.1	Wheat	nucleus	33.03	37.39
OQU80929	Sorghum	nucleus	35.0	37.38
Zm00001d031445_P001	Maize	nucleus	35.45	37.03
Os08t0508700-01	Rice	nucleus	33.48	35.7
Solyc03g096630.1.1	Tomato	nucleus	23.18	35.25
Solyc01g096810.2.1	Tomato	nucleus	31.82	34.94
Solyc01g009170.2.1	Tomato	nucleus	32.27	34.69
Solyc06g073720.1.1	Tomato	nucleus	31.97	34.59
Solyc06g073730.1.1	Tomato	nucleus	31.21	34.05
Solyc04g054840.1.1	Tomato	nucleus	23.94	31.41

Protein Annotations

Gene3D:1.10.3180.10	MapMan:11.5.2.4	MapMan:15.5.11	ncoils:Coil	InterPro:Ethylene_insens-like_DNA-bd	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009873	GO:GO:0009987
GO:GO:0071281	InterPro:IPR023278	UniProt:K4ASN1	PFAM:PF04873	PANTHER:PTHR33305	PANTHER:PTHR33305:SF11
SUPFAM:SSF116768	EnsemblPlantsGene:Solyc01g006650.1	EnsemblPlants:Solyc01g006650.1.1	UniParc:UPI00027622E6	SEG:seg	:

Description

No Description!

Coordinates

chr1:+:1246050..1248906

Molecular Weight (calculated)

73809.4 Da

IEP (calculated)

6.634

GRAVY (calculated)

-0.820

Length

660 amino acids

Sequence
(BLAST)

001: MAVMDEIGID VSSDIEIDDI KCDIAEKDVS DEEIEPKELE RRMWKDRVKL KRLKEKQKLA ARLAAEKQDN KQVTDQATRK KMSRAQDGIL KYMLKLMEVC
101: NARGFVYGII PDKGKPVSGS SDNIRAWWKE KVKFDKNGLA AIAKYEAECL ARGDGVGSQN GNPQSVLEDL QDATLGSLLS SLMQHCDPPQ RKYPLEKGIS
201: PPWWPTGDEG WWAKMGLPKG QKPPYRKPHD LKKMWKVGVL TAVIKHMSPD IAKIRRLIRK SKSLQDKMTA KESSIWLAVL SREEATLQQA GSENGSSSVE
301: EPVRNRGEKK KPLVSSDSDY DVDITDDGIG SVSYRDERRN HVHPLKAIPQ SHQSTEKGDG HHRRRKRARS NPTEKQIQPS QLHGDEHSNT LPDINSSKML
401: LAGRITSNSL QGNDKSETTN SVENDLEIQS ELPLQDSNLS LVPSAHVVRK EDTYIGAGPS FYPMSQNSAV VPYESEMHLE NQRSIVQHQF QDTQFHGLQK
501: ISGINDGPQI SLSHYGPPNN GLQYGPPSSI AHTELQVSEF AQGSQFSNFS QPPVYHSYSS PEFGATHAEP QSHLAHNELH VTPRHSGVGP SLHGSGNDIS
601: KVNHHDGKDM FQNNHDRHID MPFASPLGSP FDLGLDTESH FDNSDYDLDF DKELMSFFAS

Best Arabidopsis Sequence Match ( AT1G73730.1 )
(BLAST)

001: MGDLAMSVAD IRMENEPDDL ASDNVAEIDV SDEEIDADDL ERRMWKDRVR LKRIKERQKA GSQGAQTKET PKKISDQAQR KKMSRAQDGI LKYMLKLMEV
101: CKVRGFVYGI IPEKGKPVSG SSDNIRAWWK EKVKFDKNGP AAIAKYEEEC LAFGKSDGNR NSQFVLQDLQ DATLGSLLSS LMQHCDPPQR KYPLEKGTPP
201: PWWPTGNEEW WVKLGLPKSQ SPPYRKPHDL KKMWKVGVLT AVINHMLPDI AKIKRHVRQS KCLQDKMTAK ESAIWLAVLN QEESLIQQPS SDNGNSNVTE
301: THRRGNNADR RKPVVNSDSD YDVDGTEEAS GSVSSKDSRR NQIQKEQPTA ISHSVRDQDK AEKHRRRKRP RIRSGTVNRQ EEEQPEAQQR NILPDMNHVD
401: APLLEYNING THQEDDVVDP NIALGPEDNG LELVVPEFNN NYTYLPLVNE QTMMPVDERP MLYGPNPNQE LQFGSGYNFY NPSAVFVHNQ EDDILHTQIE
501: MNTQAPPHNS GFEEAPGGVL QPLGLLGNED GVTGSELPQY QSGILSPLTD LDFDYGGFGD DFSWFGA

Arabidopsis Description

EIL3SLIM1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZZ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.