Factsheet for PGSC0003DMT400076890

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400029235
PGSC0003DMT400089342

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73730.1	PGSC0003DMT400029235	AT1G56160.1	18218967
AT1G73730.1	PGSC0003DMT400089342	AT1G56160.1	18218967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g014480.2.1	Tomato	nucleus	94.68	94.96
HORVU0Hr1G011440.1	Barley	nucleus	40.47	70.8
PGSC0003DMT400055102	Potato	nucleus	66.62	67.52
VIT_06s0004g01610.t01	Wine grape	nucleus	53.18	57.78
KRH10163	Soybean	nucleus	48.15	55.25
KRH23176	Soybean	nucleus	48.01	54.99
AT1G73730.1	Thale cress	nucleus	44.31	52.91
Bra008110.1-P	Field mustard	nucleus	41.51	52.13
Bra015970.1-P	Field mustard	nucleus	44.46	51.28
CDY60137	Canola	nucleus	44.46	51.28
CDX73009	Canola	nucleus	44.17	51.11
CDY11093	Canola	nucleus	41.21	49.38
Bra003831.1-P	Field mustard	nucleus	40.18	49.28
CDY47740	Canola	nucleus	41.36	48.11
GSMUA_Achr9P27680_001	Banana	nucleus	37.52	41.64
GSMUA_Achr3P11160_001	Banana	nucleus	35.01	41.51
GSMUA_Achr8P25580_001	Banana	nucleus	37.37	41.07
Zm00001d020939_P001	Maize	nucleus	36.19	40.23
EER99089	Sorghum	nucleus	35.89	39.9
TraesCS5D01G273600.1	Wheat	nucleus	35.89	39.71
Os09t0490200-01	Rice	nucleus	35.45	39.28
TraesCS7D01G244600.1	Wheat	nucleus	34.71	38.27
OQU80929	Sorghum	nucleus	34.86	38.19
TraesCS5B01G265400.1	Wheat	nucleus	32.64	37.97
TraesCS7A01G246100.1	Wheat	nucleus	34.42	37.95
TraesCS7B01G145400.1	Wheat	nucleus	34.27	37.85
TraesCS5A01G265700.1	Wheat	nucleus	32.5	37.74
Os08t0508700-01	Rice	nucleus	34.42	37.64
PGSC0003DMT400022477	Potato	nucleus	33.53	36.97
Zm00001d031445_P001	Maize	nucleus	33.83	36.23
PGSC0003DMT400015148	Potato	nucleus	32.2	35.74
PGSC0003DMT400015145	Potato	nucleus	31.46	35.56
PGSC0003DMT400070751	Potato	nucleus	31.31	35.45
PGSC0003DMT400053147	Potato	nucleus	22.9	34.29
PGSC0003DMT400043160	Potato	nucleus	12.41	30.22

Protein Annotations

Gene3D:1.10.3180.10	EntrezGene:102591852	MapMan:11.5.2.4	MapMan:15.5.11	ncoils:Coil	InterPro:Ethylene_insens-like_DNA-bd
GO:GO:0003674	GO:GO:0003700	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR023278	UniProt:M1CXJ8	PFAM:PF04873	EnsemblPlantsGene:PGSC0003DMG400029908	PGSC:PGSC0003DMG400029908	EnsemblPlants:PGSC0003DMT400076890
PANTHER:PTHR33305	PANTHER:PTHR33305:SF11	SUPFAM:SSF116768	UniParc:UPI000295B0C2	RefSeq:XP_015170694.1	SEG:seg

Description

EIL1 [Source:PGSC_GENE;Acc:PGSC0003DMG400029908]

Coordinates

chr1:-:54457251..54460387

Molecular Weight (calculated)

76217.0 Da

IEP (calculated)

6.552

GRAVY (calculated)

-0.917

Length

677 amino acids

Sequence
(BLAST)

001: MEYCLIDADG LGNSSDIEVD DIRCDNIAEK DVSDEEIDPE ELERRMWKDR VKLKRLKERQ KIAAQQAAEK QKNKQTTDQA RRKKMSRAQD GILKYMLKLM
101: EVCKARGFVY GIIPEKGKPV SGSSDNIRAW WKEKVKFDKN GPAAIAKYEA ECHAKGEGIG NQNGNPQSVL QDLQDATLGS LLSSLMQHCD PPQRKYPLEK
201: GVSPPWWPSG NDEWWVKMGL PKGQKPPYKK PHDLKKMFKV GVLTAVIKHM SPDIAKIRRL VRQSKCLQDK MTAKESSIWL AVLSREESTI RLQTSDNGSS
301: SISEAPIRGH GDKKKPSVDS DSDYDVDDVN VSVSSRDERR NEPLDARPLN DVPQSHQSKE QGDGKRRRRK RARSNFQQTQ LSPSEQQPDD VARNTLPDMN
401: NSNVQFSGYI ANESQPENNM MVPRKSVERN SEGQSDLPLK DSNLSMVPSA NAVSTEEAFV GNGPSIYPML ENSEVVPYES RFHLGTQDSV VQHQLHDTQL
501: QSRPQFSGMN NEPPNSIFHY GPPNNGLHNG SRSSVLHHEL QDSGFTHGSQ YLNLHKPPIY QYYTPSAELG SAHEEQQSHL AFGQPQIKPQ DSGVRSAVLH
601: GDRNGISRED HHYGKDTFHN DHDRPAEMHF VSPITSGSPD YARLSSPFNF ELDVPSPLDT GDLELFLDED VMTFFAS

Best Arabidopsis Sequence Match ( AT1G73730.1 )
(BLAST)

001: MGDLAMSVAD IRMENEPDDL ASDNVAEIDV SDEEIDADDL ERRMWKDRVR LKRIKERQKA GSQGAQTKET PKKISDQAQR KKMSRAQDGI LKYMLKLMEV
101: CKVRGFVYGI IPEKGKPVSG SSDNIRAWWK EKVKFDKNGP AAIAKYEEEC LAFGKSDGNR NSQFVLQDLQ DATLGSLLSS LMQHCDPPQR KYPLEKGTPP
201: PWWPTGNEEW WVKLGLPKSQ SPPYRKPHDL KKMWKVGVLT AVINHMLPDI AKIKRHVRQS KCLQDKMTAK ESAIWLAVLN QEESLIQQPS SDNGNSNVTE
301: THRRGNNADR RKPVVNSDSD YDVDGTEEAS GSVSSKDSRR NQIQKEQPTA ISHSVRDQDK AEKHRRRKRP RIRSGTVNRQ EEEQPEAQQR NILPDMNHVD
401: APLLEYNING THQEDDVVDP NIALGPEDNG LELVVPEFNN NYTYLPLVNE QTMMPVDERP MLYGPNPNQE LQFGSGYNFY NPSAVFVHNQ EDDILHTQIE
501: MNTQAPPHNS GFEEAPGGVL QPLGLLGNED GVTGSELPQY QSGILSPLTD LDFDYGGFGD DFSWFGA

Arabidopsis Description

EIL3SLIM1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZZ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.