Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017975.1-P | Field mustard | cytosol | 92.78 | 92.78 |
| AT3G49570.1 | Thale cress | cytosol | 90.72 | 90.72 |
| CDX80461 | Canola | cytosol, nucleus, plastid | 69.07 | 72.04 |
| CDY08148 | Canola | cytosol | 69.07 | 72.04 |
| CDY69515 | Canola | cytosol, nucleus, plastid | 69.07 | 72.04 |
| CDY05452 | Canola | cytosol, nucleus, plastid | 68.04 | 68.04 |
| CDY05402 | Canola | nucleus | 65.98 | 65.98 |
| Solyc03g096760.1.1 | Tomato | plastid | 46.39 | 40.18 |
| PGSC0003DMT400001476 | Potato | plastid | 46.39 | 40.18 |
| Solyc03g096780.1.1 | Tomato | nucleus | 46.39 | 39.82 |
| PGSC0003DMT400001474 | Potato | plastid | 45.36 | 37.61 |
| PGSC0003DMT400001475 | Potato | plastid | 45.36 | 37.29 |
| PGSC0003DMT400069515 | Potato | cytosol | 43.3 | 37.17 |
| Solyc06g072990.1.1 | Tomato | cytosol, plastid | 43.3 | 36.84 |
| KRH53667 | Soybean | cytosol, extracellular, nucleus | 45.36 | 36.67 |
| Solyc03g096770.1.1 | Tomato | nucleus | 43.3 | 36.52 |
| KRH64261 | Soybean | nucleus | 44.33 | 35.54 |
| KRH16959 | Soybean | nucleus | 40.21 | 33.33 |
| VIT_16s0098g00600.t01 | Wine grape | cytosol, nucleus, plastid | 43.3 | 30.66 |
Protein Annotations
| EnsemblPlants:CDY08146 | EnsemblPlantsGene:GSBRNA2T00125439001 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0033554 |
| ncoils:Coil | PANTHER:PTHR34283 | PANTHER:PTHR34283:SF1 | ProteinID:CDY08146 | ProteinID:CDY08146.1 | SEG:seg |
| UniParc:UPI0004EE2B47 | UniProt:A0A078F480 | MapMan:35.2 | : | : | : |
Description
BnaA06g15800DBnaA06g15800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F480]
Coordinates
chrLK031983:-:672316..672806
Molecular Weight (calculated)
11261.4 Da
IEP (calculated)
4.491
GRAVY (calculated)
-0.531
Length
97 amino acids
Sequence
(BLAST)
(BLAST)
1: MGKGGAYLTV AAEEVEKLRR RNGELEREME EMKKEMIQLW RRTVVAEEAE ERLCSQLAEL EVESLDQARE YESRIHFLVD QISRLSSSSL EVVVMNS
1: MGKGGGYVTV AAEEVEELRR RNGELEREME EMKKEMVQLW RRTVVAEEAE ERLCSQLAEL EVESLDQARD YHSRIVFLMD QISRLSSSSL EVVVTNS
Arabidopsis Description
LSU3Protein RESPONSE TO LOW SULFUR 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCK2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.