Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_04s0008g00110.t01 | Wine grape | cytosol | 25.12 | 54.08 |
| VIT_10s0003g03810.t01 | Wine grape | nucleus | 24.17 | 53.12 |
| VIT_10s0003g03790.t01 | Wine grape | cytosol | 28.44 | 47.24 |
| GSMUA_Achr2P12970_001 | Banana | cytosol | 30.33 | 47.06 |
| GSMUA_Achr9P10340_001 | Banana | cytosol | 27.96 | 46.46 |
| GSMUA_Achr4P31480_001 | Banana | nucleus | 32.7 | 45.7 |
| VIT_10s0003g03800.t01 | Wine grape | cytosol | 27.49 | 45.67 |
| GSMUA_Achr7P01220_001 | Banana | extracellular | 25.59 | 45.38 |
| Solyc08g036620.2.1 | Tomato | nucleus | 20.85 | 42.72 |
| GSMUA_Achr6P31200_001 | Banana | nucleus | 29.86 | 42.28 |
| PGSC0003DMT400022650 | Potato | cytosol | 22.27 | 40.87 |
| KRH21078 | Soybean | cytosol | 26.07 | 39.86 |
| PGSC0003DMT400002991 | Potato | nucleus | 19.91 | 39.62 |
| PGSC0003DMT400002985 | Potato | cytosol | 21.33 | 38.79 |
| Solyc08g036640.2.1 | Tomato | nucleus | 20.38 | 38.39 |
| KRH11175 | Soybean | cytosol | 24.17 | 38.35 |
| KRH58647 | Soybean | cytosol | 24.17 | 38.06 |
| PGSC0003DMT400022651 | Potato | mitochondrion, nucleus | 22.27 | 37.9 |
| Solyc08g036660.2.1 | Tomato | mitochondrion | 22.27 | 37.01 |
| Bra021923.1-P | Field mustard | cytosol | 18.96 | 34.19 |
| CDY43664 | Canola | nucleus | 18.96 | 33.61 |
| CDY17268 | Canola | cytosol | 18.01 | 32.76 |
| Bra005407.1-P | Field mustard | cytosol | 18.01 | 32.76 |
| CDX84301 | Canola | cytosol | 18.01 | 32.76 |
| KRH42552 | Soybean | nucleus | 22.75 | 32.0 |
| Bra032362.1-P | Field mustard | nucleus | 19.91 | 31.58 |
| AT2G34600.1 | Thale cress | nucleus | 21.8 | 31.08 |
| CDX99884 | Canola | nucleus | 19.43 | 31.06 |
| Bra022981.1-P | Field mustard | nucleus | 16.59 | 30.97 |
| CDY26288 | Canola | nucleus | 19.43 | 30.83 |
| AT1G30135.1 | Thale cress | nucleus | 18.96 | 30.53 |
| CDY51470 | Canola | nucleus | 18.48 | 30.0 |
| Bra010794.1-P | Field mustard | nucleus | 18.48 | 30.0 |
| CDX90230 | Canola | nucleus | 18.48 | 30.0 |
| CDX84639 | Canola | nucleus | 16.11 | 29.82 |
| CDX79568 | Canola | nucleus | 14.69 | 27.43 |
| GSMUA_Achr3P23250_001 | Banana | cytosol | 18.96 | 22.47 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P01230_001 | EnsemblPlants:GSMUA_Achr7T01230_001 | EnsemblPlantsGene:GSMUA_Achr7G01230_001 | InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom |
| PANTHER:PTHR33077 | PANTHER:PTHR33077:SF17 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | SEG:seg |
| SMART:SM00979 | UniParc:UPI00029589A5 | UniProt:M0TDR3 | MapMan:15.5.45 | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr7G01230_001]
Coordinates
chr7:-:928878..933244
Molecular Weight (calculated)
24043.6 Da
IEP (calculated)
8.883
GRAVY (calculated)
-0.482
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGSRCDPDL CLRLGINGGG DGGHCSTEFS PSRVEEASGS SRSEYQQQQQ QLTICYNGRI CVCDVTEIEA EAIIAMARQE TDDQTRKKRQ EQQPKESSTT
101: SSSSPPPLPP PRFLQHLHID PELSRKRSLQ RFLQKRKSRM NAVSPYCHPP QLFFSIKSYG ISSIFQILKI RDWLSSIKYQ TFPPFFFLSF FLGFNTSIFA
201: KFGNNIFPQV F
101: SSSSPPPLPP PRFLQHLHID PELSRKRSLQ RFLQKRKSRM NAVSPYCHPP QLFFSIKSYG ISSIFQILKI RDWLSSIKYQ TFPPFFFLSF FLGFNTSIFA
201: KFGNNIFPQV F
001: MIIIIKNCDK PLLNFKEMEM QTKCDLELRL LTSSYDSDFH SSLDESSSSE ISQPKQESQI LTIFYNGHMC VSSDLTHLEA NAILSLASRD VEEKSLSLRS
101: SDGSDPPTIP NNSTRFHYQK ASMKRSLHSF LQKRSLRIQA TSPYHRYR
101: SDGSDPPTIP NNSTRFHYQK ASMKRSLHSF LQKRSLRIQA TSPYHRYR
Arabidopsis Description
TIFY 5BProtein TIFY 5B [Source:UniProtKB/Swiss-Prot;Acc:O64687]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.