Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 3
- extracellular 5
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_04s0008g00110.t01 | Wine grape | cytosol | 36.97 | 44.9 |
| VIT_10s0003g03810.t01 | Wine grape | nucleus | 35.29 | 43.75 |
| PGSC0003DMT400002991 | Potato | nucleus | 34.45 | 38.68 |
| Solyc08g036620.2.1 | Tomato | nucleus | 32.77 | 37.86 |
| PGSC0003DMT400022650 | Potato | cytosol | 35.29 | 36.52 |
| VIT_10s0003g03790.t01 | Wine grape | cytosol | 38.66 | 36.22 |
| GSMUA_Achr6P31200_001 | Banana | nucleus | 44.54 | 35.57 |
| GSMUA_Achr9P10340_001 | Banana | cytosol | 37.82 | 35.43 |
| VIT_10s0003g03800.t01 | Wine grape | cytosol | 36.97 | 34.65 |
| GSMUA_Achr4P31480_001 | Banana | nucleus | 43.7 | 34.44 |
| GSMUA_Achr2P12970_001 | Banana | cytosol | 38.66 | 33.82 |
| Solyc08g036640.2.1 | Tomato | nucleus | 31.09 | 33.04 |
| PGSC0003DMT400002985 | Potato | cytosol | 31.93 | 32.76 |
| Bra021923.1-P | Field mustard | cytosol | 31.09 | 31.62 |
| Solyc08g036660.2.1 | Tomato | mitochondrion | 33.61 | 31.5 |
| PGSC0003DMT400022651 | Potato | mitochondrion, nucleus | 32.77 | 31.45 |
| CDY43664 | Canola | nucleus | 31.09 | 31.09 |
| CDY51470 | Canola | nucleus | 33.61 | 30.77 |
| Bra010794.1-P | Field mustard | nucleus | 33.61 | 30.77 |
| CDX90230 | Canola | nucleus | 33.61 | 30.77 |
| CDY17268 | Canola | cytosol | 29.41 | 30.17 |
| Bra005407.1-P | Field mustard | cytosol | 29.41 | 30.17 |
| CDX84301 | Canola | cytosol | 29.41 | 30.17 |
| CDX99884 | Canola | nucleus | 32.77 | 29.55 |
| Bra032362.1-P | Field mustard | nucleus | 32.77 | 29.32 |
| CDY26288 | Canola | nucleus | 31.93 | 28.57 |
| KRH58647 | Soybean | cytosol | 31.93 | 28.36 |
| KRH21078 | Soybean | cytosol | 32.77 | 28.26 |
| KRH11175 | Soybean | cytosol | 31.09 | 27.82 |
| Bra022981.1-P | Field mustard | nucleus | 26.05 | 27.43 |
| CDX84639 | Canola | nucleus | 26.05 | 27.19 |
| AT1G30135.1 | Thale cress | nucleus | 29.41 | 26.72 |
| AT2G34600.1 | Thale cress | nucleus | 31.93 | 25.68 |
| CDX79568 | Canola | nucleus | 24.37 | 25.66 |
| GSMUA_Achr7P01230_001 | Banana | nucleus | 45.38 | 25.59 |
| KRH42552 | Soybean | nucleus | 31.93 | 25.33 |
| GSMUA_Achr3P23250_001 | Banana | cytosol | 31.09 | 20.79 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P01220_001 | EnsemblPlants:GSMUA_Achr7T01220_001 | EnsemblPlantsGene:GSMUA_Achr7G01220_001 | InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom |
| PANTHER:PTHR33077 | PANTHER:PTHR33077:SF17 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | SEG:seg |
| SMART:SM00979 | UniParc:UPI000295CA56 | UniProt:M0TDR2 | MapMan:15.5.45 | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr7G01220_001]
Coordinates
chr7:-:926800..927259
Molecular Weight (calculated)
13653.8 Da
IEP (calculated)
10.055
GRAVY (calculated)
-0.410
Length
119 amino acids
Sequence
(BLAST)
(BLAST)
001: MDYLPFLWYA LCRLVEFLGK SKESQQQQIT LFYNGRICVC NLTDTKARAI ISMAKRQMDE QQAKGSSFLP RDPPPSPHPH PPEQLLINPG LAMKRSLQLF
101: LQKRKSRVHS LSPYAPCPL
101: LQKRKSRVHS LSPYAPCPL
001: MKLQQNCDLE LRLFPTSYDS DSSDTTSVVE STSSGNPQPN EESQRITIFY NGKMCFSSDV THLQARSIIS IASREMKTKS SSNGSDPPNK STSFHHNQLP
101: NPKASMKKSL QSFLQKRKIR IQATSPYHSR R
101: NPKASMKKSL QSFLQKRKIR IQATSPYHSR R
Arabidopsis Description
TIFY5AProtein TIFY 5A [Source:UniProtKB/Swiss-Prot;Acc:Q8LBM2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.