Factsheet for GSMUA_Achr1P18910_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P20820_001	Banana	nucleus	57.87	61.96
GSMUA_Achr10P...	Banana	nucleus	58.12	57.39
GSMUA_Achr1P08130_001	Banana	mitochondrion	59.9	42.29
VIT_15s0048g02820.t01	Wine grape	nucleus	51.27	40.64
AT4G00870.1	Thale cress	nucleus, plastid	38.07	35.46
GSMUA_Achr3P00370_001	Banana	plastid	37.06	33.18
GSMUA_Achr7P04720_001	Banana	nucleus	37.82	31.77
GSMUA_Achr11P...	Banana	nucleus	35.79	31.47
GSMUA_Achr2P18140_001	Banana	nucleus	36.04	30.6
GSMUA_Achr4P16980_001	Banana	nucleus	35.53	27.61
GSMUA_Achr10P...	Banana	nucleus	31.98	27.45
GSMUA_Achr8P05350_001	Banana	nucleus	30.46	26.61
GSMUA_Achr8P26280_001	Banana	cytosol	30.2	25.7
GSMUA_Achr8P14720_001	Banana	nucleus	37.31	25.13
GSMUA_Achr1P28110_001	Banana	nucleus	31.47	24.95
GSMUA_AchrUn_...	Banana	cytosol	32.23	24.56
GSMUA_Achr5P18100_001	Banana	nucleus	30.46	24.54
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	29.44	24.42
GSMUA_Achr11P...	Banana	nucleus	29.7	24.32
GSMUA_Achr6P35730_001	Banana	nucleus	29.44	23.63
GSMUA_Achr7P14640_001	Banana	nucleus	28.93	23.55
GSMUA_Achr8P05170_001	Banana	nucleus	11.68	22.89
GSMUA_Achr1P14370_001	Banana	cytosol, nucleus, plastid	31.73	21.74
GSMUA_Achr2P08590_001	Banana	nucleus	13.71	20.3
GSMUA_Achr3P17620_001	Banana	nucleus	26.4	18.44
GSMUA_Achr7P00800_001	Banana	cytosol	10.91	18.38
GSMUA_Achr3P26180_001	Banana	nucleus	13.2	17.63
GSMUA_Achr4P03160_001	Banana	nucleus	14.47	17.43
GSMUA_Achr7P27600_001	Banana	nucleus	14.47	17.07
GSMUA_Achr3P30620_001	Banana	nucleus	13.96	16.98
GSMUA_Achr8P11430_001	Banana	nucleus	23.35	16.85
GSMUA_AchrUn_...	Banana	nucleus	13.45	16.46
GSMUA_Achr11P...	Banana	nucleus	19.29	16.14
GSMUA_Achr6P21490_001	Banana	nucleus	25.38	15.36
GSMUA_Achr11P...	Banana	nucleus	23.1	15.35
GSMUA_Achr4P23070_001	Banana	nucleus	12.18	15.34
GSMUA_Achr8P26460_001	Banana	nucleus	12.69	15.06
GSMUA_Achr11P...	Banana	nucleus	21.07	15.04
GSMUA_Achr4P14580_001	Banana	nucleus	11.42	13.55
GSMUA_Achr5P20600_001	Banana	nucleus	18.02	12.07
GSMUA_Achr4P03170_001	Banana	nucleus	10.15	11.73

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	EnsemblPlantsGene:GSMUA_Achr1G18910_001	EnsemblPlants:GSMUA_Achr1P18910_001	EnsemblPlants:GSMUA_Achr1T18910_001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	UniProt:M0S149	InterPro:MYC/MYB_N	PFAM:PF00010	PFAM:PF14215	PFscan:PS50888
PANTHER:PTHR11514	PANTHER:PTHR11514:SF40	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000295C972	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

Putative Transcription factor bHLH14 [Source:GMGC_GENE;Acc:GSMUA_Achr1G18910_001]

Coordinates

chr1:+:14131384..14134437

Molecular Weight (calculated)

43151.4 Da

IEP (calculated)

6.328

GRAVY (calculated)

-0.256

Length

394 amino acids

Sequence
(BLAST)

001: MLLLQQDSKA YTVIDAVTTA ALQHRLQCLL GSRPEWWTYA IFWRASPDHH LLAFGDGHFR GNRELDGRRV PPRSGSGGGV HAVLIDEACT DGDDAEWFYV
101: VSLTRCFAAG EAAVPARVYG TLALVWLTGA HALQTCGCDR TREAQLHGIE TIVCVPVAGG VLELGSSELV GENWVLVQQA KAIFSVPDDE ADAGLAPVVT
201: LPSPVSKKEV SGPSMSVDTE QFSDSEGGQT VEGLRGKKRG RKPGSRRETP VNHVEAERQR REKLNHRFYA LRSVVPNVSR MDKASLLADA VSYIKELKSK
301: LEDLEADSKR AKKEINVEVK SLGPDAMIRV QTENVSHPTA KLMEVLRELE LQVHHASVSS VKEVMLHDVV VRVPDGLQAE DSLRDALLTK LETS

Best Arabidopsis Sequence Match ( AT4G00870.1 )
(BLAST)

001: MYNLTFSPSL SSSLLSFTQQ TPAAIVSSSP PDLVLQQKLR FVVETSPDRW AYVIFWQKMF DDQSDRSYLV WVDGHFCGNK NNNSQENYTT NSIECELMMD
101: GGDDLELFYA ASFYGEDRSP RKEVSDESLV WLTGPDELRF SNYERAKEAG FHGVHTLVSI PINNGIIELG SSESIIQNRN FINRVKSIFG SGKTTKHTNQ
201: TGSYPKPAVS DHSKSGNQQF GSERKRRRKL ETTRVAAATK EKHHPAVLSH VEAEKQRREK LNHRFYALRA IVPKVSRMDK ASLLSDAVSY IESLKSKIDD
301: LETEIKKMKM TETDKLDNSS SNTSPSSVEY QVNQKPSKSN RGSDLEVQVK IVGEEAIIRV QTENVNHPTS ALMSALMEMD CRVQHANASR LSQVMVQDVV
401: VLVPEGLRSE DRLRTTLVRT LSL

Arabidopsis Description

BHLH14Transcription factor bHLH14 [Source:UniProtKB/Swiss-Prot;Acc:O23090]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.