Factsheet for GSMUA_Achr4P16980_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	nucleus	53.25	60.27
GSMUA_Achr2P18140_001	Banana	nucleus	51.08	55.82
GSMUA_Achr11P...	Banana	nucleus	50.3	53.01
GSMUA_Achr5P18100_001	Banana	nucleus	51.08	52.97
GSMUA_Achr7P04720_001	Banana	nucleus	48.52	52.45
GSMUA_Achr8P14720_001	Banana	nucleus	58.78	50.94
GSMUA_Achr3P00370_001	Banana	plastid	43.59	50.23
GSMUA_AchrUn_...	Banana	cytosol	38.66	37.91
GSMUA_Achr10P...	Banana	nucleus	28.01	35.59
GSMUA_Achr1P18910_001	Banana	nucleus	27.61	35.53
GSMUA_Achr9P20820_001	Banana	nucleus	24.65	33.97
GSMUA_Achr8P05350_001	Banana	nucleus	28.21	31.71
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	26.82	28.63
GSMUA_Achr1P28110_001	Banana	nucleus	28.01	28.57
GSMUA_Achr10P...	Banana	nucleus	25.25	27.89
GSMUA_Achr6P35730_001	Banana	nucleus	26.82	27.7
GSMUA_Achr8P26280_001	Banana	cytosol	25.25	27.65
GSMUA_Achr1P14370_001	Banana	cytosol, nucleus, plastid	28.6	25.22
GSMUA_Achr8P05170_001	Banana	nucleus	9.86	24.88
GSMUA_Achr1P08130_001	Banana	mitochondrion	27.02	24.55
GSMUA_Achr7P14640_001	Banana	nucleus	22.49	23.55
GSMUA_Achr2P08590_001	Banana	nucleus	11.83	22.56
GSMUA_Achr3P26180_001	Banana	nucleus	12.82	22.03
GSMUA_Achr8P26460_001	Banana	nucleus	13.21	20.18
GSMUA_Achr7P00800_001	Banana	cytosol	9.07	19.66
GSMUA_Achr7P27600_001	Banana	nucleus	12.82	19.46
GSMUA_Achr4P03160_001	Banana	nucleus	12.43	19.27
GSMUA_Achr8P11430_001	Banana	nucleus	20.71	19.23
GSMUA_Achr11P...	Banana	nucleus	17.75	19.11
GSMUA_Achr4P23070_001	Banana	nucleus	11.44	18.53
GSMUA_Achr3P30620_001	Banana	nucleus	11.83	18.52
GSMUA_Achr3P17620_001	Banana	nucleus	20.51	18.44
GSMUA_AchrUn_...	Banana	nucleus	11.44	18.01
GSMUA_Achr11P...	Banana	nucleus	19.13	17.57
GSMUA_Achr11P...	Banana	nucleus	19.53	16.69
GSMUA_Achr6P21490_001	Banana	nucleus	20.91	16.28
GSMUA_Achr5P20600_001	Banana	nucleus	18.34	15.82
GSMUA_Achr4P14580_001	Banana	nucleus	9.47	14.46
GSMUA_Achr4P03170_001	Banana	nucleus	9.07	13.49

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	EnsemblPlantsGene:GSMUA_Achr4G16980_001	EnsemblPlants:GSMUA_Achr4P16980_001	EnsemblPlants:GSMUA_Achr4T16980_001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	UniProt:M0SPL2	InterPro:MYC/MYB_N	PFAM:PF00010	PFAM:PF14215	PFscan:PS50888
PANTHER:PTHR11514	PANTHER:PTHR11514:SF43	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000296244B	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

Putative Transcription factor MYC4 [Source:GMGC_GENE;Acc:GSMUA_Achr4G16980_001]

Coordinates

chr4:+:15613924..15616743

Molecular Weight (calculated)

55331.3 Da

IEP (calculated)

5.406

GRAVY (calculated)

-0.408

Length

507 amino acids

Sequence
(BLAST)

001: MNLCADDSAS MMEALIATAA DLQGCPWAVV SPPPRPPAPV TPSDVSRSFS ATATAPVPAP HLDKEMLHER LQALIEGVRD SWTYVILWQS SVDTDTGESL
101: LVWADGCYKG CEEDKRKQQP AAASAASAAE QVRRKRVLRE LNSLIDGDER SSSANEAAED EALFSGDPSW LAGADRLAVA PCDRARQATV FGIQTMVYVP
201: VSPGVLELGS TQLISHSSEI TSKIRILFDL NSLQMPLANA AAGSTQPFFA RELNFSELLH TGPAAPLQSV KPESDENGNF IGSKRNSSAA IVASNLFSSH
301: QIAAAGADSD HSDTERSMRK MGSSLLTDPE KRPRKRGRKP ANGREEPLNH VEAERQRREK LNQRFYALRS VVPNVSKMDK ASLLGDATTY INELRVKLQS
401: LESEKEGLEA QTTNGNGRCY GVEMEVKMLD SEAMIRLQCQ NTNHPTAMLM SALKDLNLDV YYASVSVVKD LMIQQATVKM SSREYTQEQL SSALYYRVAA
501: EPPPASR

Best Arabidopsis Sequence Match ( AT4G17880.1 )
(BLAST)

001: MSPTNVQVTD YHLNQSKTDT TNLWSTDDDA SVMEAFIGGG SDHSSLFPPL PPPPLPQVNE DNLQQRLQAL IEGANENWTY AVFWQSSHGF AGEDNNNNNT
101: VLLGWGDGYY KGEEEKSRKK KSNPASAAEQ EHRKRVIREL NSLISGGVGG GDEAGDEEVT DTEWFFLVSM TQSFVKGTGL PGQAFSNSDT IWLSGSNALA
201: GSSCERARQG QIYGLQTMVC VATENGVVEL GSSEIIHQSS DLVDKVDTFF NFNNGGGEFG SWAFNLNPDQ GENDPGLWIS EPNGVDSGLV AAPVMNNGGN
301: DSTSNSDSQP ISKLCNGSSV ENPNPKVLKS CEMVNFKNGI ENGQEEDSSN KKRSPVSNNE EGMLSFTSVL PCDSNHSDLE ASVAKEAESN RVVVEPEKKP
401: RKRGRKPANG REEPLNHVEA ERQRREKLNQ RFYSLRAVVP NVSKMDKASL LGDAISYISE LKSKLQKAES DKEELQKQID VMNKEAGNAK SSVKDRKCLN
501: QESSVLIEME VDVKIIGWDA MIRIQCSKRN HPGAKFMEAL KELDLEVNHA SLSVVNDLMI QQATVKMGNQ FFTQDQLKVA LTEKVGECP

Arabidopsis Description

MYC4Transcription factor MYC4 [Source:UniProtKB/Swiss-Prot;Acc:O49687]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.