Factsheet for GSMUA_Achr4P29160_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr3P17620_001
GSMUA_Achr5P20600_001
GSMUA_Achr6P21490_001
GSMUA_Achr8P11430_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24520.1	GSMUA_Achr11P...	AT1G63650.1	12917293
AT5G24520.1	GSMUA_Achr11P...	AT1G63650.1	12917293
AT5G24520.1	GSMUA_Achr11P...	AT1G63650.1	12917293
AT5G24520.1	GSMUA_Achr5P20600_001	AT1G63650.1	12917293
AT5G24520.1	GSMUA_Achr8P11430_001	AT1G63650.1	12917293
AT5G24520.1	GSMUA_Achr3P17620_001	AT4G09820.1	15255866
AT5G24520.1	GSMUA_Achr6P21490_001	AT4G09820.1	15255866

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80449	Canola	cytosol	50.47	67.23
KRH53635	Soybean	cytosol	70.03	66.07
PGSC0003DMT400068077	Potato	cytosol	70.98	65.79
VIT_16s0098g00870.t01	Wine grape	nucleus	69.4	65.48
KRH64293	Soybean	cytosol	69.09	65.37
Solyc03g097340.1.1	Tomato	cytosol	70.35	65.2
PGSC0003DMT400001513	Potato	nucleus	70.03	64.91
Bra009770.1-P	Field mustard	cytosol	66.88	62.91
AT5G24520.1	Thale cress	cytosol	66.56	61.88
TraesCS6B01G286700.1	Wheat	cytosol	69.4	61.8
TraesCS6A01G259400.1	Wheat	cytosol	69.09	61.52
Os02t0682500-01	Rice	cytosol	68.45	61.13
Zm00001d017616_P001	Maize	extracellular	67.51	60.62
GSMUA_Achr10P...	Banana	cytosol	54.89	60.21
CDY05440	Canola	cytosol	22.4	59.17
Bra029411.1-P	Field mustard	cytosol	22.4	59.17
PGSC0003DMT400094468	Potato	cytosol	63.41	58.6
Solyc03g081210.1.1	Tomato	cytosol	63.09	58.48
HORVU0Hr1G016450.1	Barley	cytosol	68.45	57.56
EES05725	Sorghum	cytosol	57.1	56.92
GSMUA_Achr6P11830_001	Banana	cytosol	56.78	52.63
GSMUA_Achr5P10240_001	Banana	nucleus	36.28	47.13
CDY05439	Canola	cytosol	14.83	46.08
Bra029410.1-P	Field mustard	cytosol	14.83	46.08

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0008150	GO:GO:0009719	GO:GO:0009723	GO:GO:0009733	GO:GO:0009957	GO:GO:0009987
GO:GO:0010026	GO:GO:0030154	GO:GO:0032880	GO:GO:0045165	EnsemblPlantsGene:GSMUA_Achr4G29160_001	EnsemblPlants:GSMUA_Achr4P29160_001
EnsemblPlants:GSMUA_Achr4T29160_001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M0ST28	PFAM:PF00400
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19919	PANTHER:PTHR19919:SF2	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI0002949520	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

Protein TRANSPARENT TESTA GLABRA 1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G29160_001]

Coordinates

chr4:-:27253778..27254800

Molecular Weight (calculated)

34457.6 Da

IEP (calculated)

5.013

GRAVY (calculated)

-0.084

Length

317 amino acids

Sequence
(BLAST)

001: MESSTQESPL NSNAFTFDSP HPVYAMAFSP SSAAAAASPR LALGSFIEEY GNRVDVVSFD EDALSFRAEP AVSFDHPYPS TKLMFHPHPN SPLLASASDC
101: LRLWLLGPDG AKIRSPRRIG TSSIDTTCTI WDVERGAVET QLIAHDKEVY DIAWGEPAVF ASVSADGSVR IFDLRDKEHS TIIYESPRPD TPLLRLAWNK
201: ANLRYMATTM MDSNRVVVLD IRAPATPVAE LQRHCASVNA IAWSPKAARH ICSAGDDGQA LIWELPAAAA AGTVSPEGID PMLVYTAGAE INQLQWSAAH
301: PDWIGIAFAN KVQLLRV

Best Arabidopsis Sequence Match ( AT5G24520.4 )
(BLAST)

001: MDNSAPDSLS RSETAVTYDS PYPLYAMAFS SLRSSSGHRI AVGSFLEDYN NRIDILSFDS DSMTVKPLPN LSFEHPYPPT KLMFSPPSLR RPSSGDLLAS
101: SGDFLRLWEI NEDSSTVEPI SVLNNSKTSE FCAPLTSFDW NDVEPKRLGT CSIDTTCTIW DIEKSVVETQ LIAHDKEVHD IAWGEARVFA SVSADGSVRI
201: FDLRDKEHST IIYESPQPDT PLLRLAWNKQ DLRYMATILM DSNKVVILDI RSPTMPVAEL ERHQASVNAI AWAPQSCKHI CSGGDDTQAL IWELPTVAGP
301: NGIDPMSVYS AGSEINQLQW SSSQPDWIGI AFANKMQLLR V

Arabidopsis Description

TTG1Protein TRANSPARENT TESTA GLABRA 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XGN1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.