Factsheet for Solyc10g052740.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 3
endoplasmic reticulum 4
vacuole 4
plasma membrane 3
golgi 3
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	vacuole

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G211700.1	Wheat	plastid	64.44	63.97
Solyc01g018090.1.1	Tomato	mitochondrion	37.04	50.51
Solyc01g017310.1.1	Tomato	mitochondrion	14.81	27.03
KRH49261	Soybean	cytosol, mitochondrion	17.78	20.87
Solyc12g033050.1.1	Tomato	plastid	15.56	10.61
Solyc12g032980.1.1	Tomato	nucleus	7.41	7.63
Solyc06g009940.1.1	Tomato	nucleus	2.96	5.56
Solyc10g017890.1.1	Tomato	nucleus	2.22	0.96
Solyc02g020960.1.1	Tomato	plastid	1.48	0.71
Solyc09g059640.1.1	Tomato	cytosol	0.0	0.0
HORVU4Hr1G045260.1	Barley	cytosol	0.0	0.0
TraesCS1D01G171400.1	Wheat	cytosol	0.0	0.0
Solyc12g062600.1.1	Tomato	cytosol, nucleus, plastid	0.0	0.0
Solyc12g035740.1.1	Tomato	cytosol, mitochondrion, plastid	0.0	0.0
Solyc12g033060.1.1	Tomato	plastid	0.0	0.0
Solyc12g033040.1.1	Tomato	cytosol	0.0	0.0
Solyc12g032990.1.1	Tomato	plastid	0.0	0.0
Solyc10g017900.1.1	Tomato	extracellular, golgi, plasma membrane	0.0	0.0
Solyc01g017320.1.1	Tomato	cytosol, golgi, mitochondrion, plastid	0.0	0.0
Solyc09g018800.1.1	Tomato	cytosol	0.0	0.0
Solyc09g015340.1.1	Tomato	golgi	0.0	0.0
Solyc09g015320.1.1	Tomato	cytosol	0.0	0.0
Solyc09g015300.1.1	Tomato	cytosol	0.0	0.0
Solyc07g021240.1.1	Tomato	cytoskeleton, cytosol, plastid	0.0	0.0
Solyc05g020010.1.1	Tomato	nucleus	0.0	0.0
Solyc01g017300.1.1	Tomato	plastid	0.0	0.0
Solyc01g017330.1.1	Tomato	extracellular	0.0	0.0

Protein Annotations

Gene3D:1.20.1130.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009522	GO:GO:0009579	GO:GO:0009987
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872	InterPro:IPR036408	UniProt:K4D0X2
PFAM:PF00223	InterPro:PSI_PsaA	InterPro:PSI_PsaA/B	InterPro:PSI_PsaA/B_sf	PANTHER:PTHR30128	PANTHER:PTHR30128:SF8
SUPFAM:SSF81558	EnsemblPlantsGene:Solyc10g052740.1	EnsemblPlants:Solyc10g052740.1.1	TMHMM:TMhelix	UniParc:UPI000276A874	:

Description

No Description!

Coordinates

chr10:-:53322835..53323242

Molecular Weight (calculated)

15550.0 Da

IEP (calculated)

7.560

GRAVY (calculated)

0.438

Length

135 amino acids

Sequence
(BLAST)

001: MFSSYILMYP RQYLMYPSYI LTHIGPSAQV VWPIVGQEIL NGDVGGGFRG IQITSGFFQL WRASGITSEL QLYCTAIGAL VFAVMLFAGW FHYHKAAPKL
101: AWFQDVESML NHYPSFDYCI RFFLVFKGLI YLETY

Best Arabidopsis Sequence Match ( AT2G33840.1 )
(BLAST)

001: MADQSSEIVN ALSSEMEAVS VSSTQASSSS DGFQMSEEVE KRYKIVRSIG EECIQEEELK NLLAKKAAPI CYDGFEPSGR MHIAQGVMKV INVNKMTSAG
101: CRVKIWIADW FAQLNNKMGG DLKKIRVVGE YFQEIWKAAG MDNDKVEFLW SSEEINSKAD KYWPLVMDIA RKNKLPRILR CVQIMGRSET DELSAAQILY
201: PCMQCADIFF LEADICQLGM DQRKVNVLAR EYCDDIKRKN KPIILSHHML PGLQQGQEKM SKSDPLSAIF MEDEEAEVNV KIKKAYCPPK VVKGNPCLEY
301: IKYIILPWFD EFTVERNEEY GGNKTYKSFE DIAADYESGE LHPGDLKKGL MNALNKILQP VRDHFKTDAR AKNLLKQIKA YRVTR

Arabidopsis Description

Tyrosine--tRNA ligase 1, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q8S9J2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.