Factsheet for TraesCS4D01G064200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G249400.1	Wheat	nucleus	75.48	86.67
TraesCS4B01G065300.1	Wheat	nucleus	67.1	77.32
HORVU4Hr1G010840.15	Barley	nucleus	65.16	67.56
Os03t0734900-00	Rice	nucleus	59.03	67.53
Zm00001d013331_P001	Maize	nucleus	59.35	66.19
EER90915	Sorghum	nucleus	57.1	64.13
KRH52968	Soybean	nucleus	33.55	29.63
KRH62255	Soybean	nucleus	32.9	29.14
TraesCS6D01G108700.2	Wheat	nucleus	31.94	28.95
VIT_18s0001g07730.t01	Wine grape	nucleus	33.87	28.53
PGSC0003DMT400024207	Potato	nucleus	32.26	28.33
KRH42075	Soybean	nucleus	30.0	25.98
TraesCS7D01G416000.2	Wheat	nucleus	31.94	25.38
KRH49841	Soybean	nucleus	29.03	25.35
PGSC0003DMT400027729	Potato	nucleus	30.0	24.8
Solyc01g106040.2.1	Tomato	nucleus	29.68	24.34
VIT_03s0038g00580.t01	Wine grape	cytosol	11.94	20.9
Solyc04g076530.2.1	Tomato	nucleus	33.23	16.3

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR000679	InterPro:IPR010399
InterPro:IPR010402	InterPro:IPR013088	PFAM:PF00320	PFAM:PF06200	PFAM:PF06203	ScanProsite:PS00344
PFscan:PS51017	PFscan:PS51320	PANTHER:PTHR10071	PANTHER:PTHR10071:SF277	SMART:SM00401	SMART:SM00979
SUPFAM:SSF57716	InterPro:Tify_dom	EnsemblPlantsGene:TraesCS4D01G064200	EnsemblPlants:TraesCS4D01G064200.1	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA
TIGR:cd00202	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4D:-:39409805..39413895

Molecular Weight (calculated)

32833.0 Da

IEP (calculated)

6.887

GRAVY (calculated)

-0.333

Length

310 amino acids

Sequence
(BLAST)

001: MAADGQDPPL ADAAAAASGD DDAAAADALL SPASEQLTLL YQGEVYVFDP VPPQKVAPSA PFASNFFPIA FAEPAVLTLP ALDGAAGSEL RRGNIRLLVQ
101: AALLVLGGCE VPPGLVSMAG PTAYGEKSTT VAAKRVASLM RFREKRKERC FDKKIRYGVR KEVAQKMKRR KGQFAGRVDF GDAASSSAAC VSAADGEDDH
201: FRESHCQNCG VNSRLTPAMR RGPAGPRTLC NACGLMWANK GTLRSPLNAP KMTVQHPANL SKMESVDDDK AIVCAEPNHT TVKMDSGMSP EQEQKPELRP
301: ATEGDSMADS

Best Arabidopsis Sequence Match ( AT1G51600.1 )
(BLAST)

001: MDDLHGSNAR MHIREAQDPM HVQFEHHALH HIHNGSGMVD DQADDGNAGG MSEGVETDIP SHPGNVTDNR GEVVDRGSEQ GDQLTLSFQG QVYVFDSVLP
101: EKVQAVLLLL GGRELPQAAP PGLGSPHQNN RVSSLPGTPQ RFSIPQRLAS LVRFREKRKG RNFDKKIRYT VRKEVALRMQ RNKGQFTSAK SNNDEAASAG
201: SSWGSNQTWA IESSEAQHQE ISCRHCGIGE KSTPMMRRGP AGPRTLCNAC GLMWANKGAF RDLSKASPQT AQNLPLNKNE DANLETDHQI MITVANDISN
301: SQ

Arabidopsis Description

GATA28GATA transcription factor 28 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1G0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.