Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G094220.7 | |
| HORVU6Hr1G021570.1 | |
| HORVU7Hr1G097840.6 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G58575.1 | HORVU6Hr1G021570.1 | AT3G21175.1 | 21798944 |
| AT5G58575.1 | HORVU7Hr1G097840.6 | AT3G21175.1 | 21798944 |
| AT5G58575.1 | HORVU3Hr1G094220.7 | AT3G27100.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G223200.1 | Wheat | cytosol, nucleus, plastid | 94.19 | 92.41 |
| TraesCS1D01G224800.1 | Wheat | cytosol, nucleus, plastid | 94.19 | 92.41 |
| TraesCS1B01G236500.1 | Wheat | extracellular, golgi, plastid | 94.19 | 70.19 |
| EES18037 | Sorghum | cytosol | 78.06 | 63.35 |
| Os05t0351500-01 | Rice | cytosol | 73.55 | 60.96 |
| Zm00001d038002_P001 | Maize | nucleus | 77.42 | 55.05 |
| Bra006753.1-P | Field mustard | mitochondrion | 21.94 | 51.52 |
| VIT_06s0004g06970.t01 | Wine grape | cytosol | 54.19 | 50.0 |
| GSMUA_Achr5P28120_001 | Banana | mitochondrion | 25.16 | 48.75 |
| PGSC0003DMT400078237 | Potato | nucleus | 54.84 | 48.3 |
| CDY65780 | Canola | cytosol, nucleus, plastid | 49.03 | 47.2 |
| KRH30221 | Soybean | cytosol | 54.84 | 46.96 |
| AT5G58575.1 | Thale cress | cytosol, nucleus, plastid | 52.9 | 45.3 |
| KRG98249 | Soybean | endoplasmic reticulum, plasma membrane | 50.32 | 40.41 |
| Solyc06g082160.2.1 | Tomato | plastid | 53.55 | 24.7 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G060100.2 | EnsemblPlantsGene:HORVU1Hr1G060100 | Gene3D:3.30.160.60 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:SAGA_su_Sgf11 | PANTHER:PTHR15117 | PANTHER:PTHR15117:SF22 | PFAM:PF08209 | SEG:seg |
| UniParc:UPI0002955543 | UniProt:M0WPZ5 | MapMan:15.3.4.2.1 | : | : | : |
Description
SAGA-associated factor 11 [Source:UniProtKB/TrEMBL;Acc:M0WPZ5]
Coordinates
chrchr1H:+:437148722..437151962
Molecular Weight (calculated)
16367.0 Da
IEP (calculated)
6.504
GRAVY (calculated)
-0.537
Length
155 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSNDAPAS PRSQLVLSCF EELLDLAVAD VASECHRIAR LGLDRSVDAE EEELRLWAAR VAGDHPGAED GATRGAGGNK GAPDVFGQTH PAIAADVVDC
101: MNCGRPVVAG RFAPHLEKCM GKGRKARAKT TRSSTAGRNR SSNGEEHSNH AFQES
101: MNCGRPVVAG RFAPHLEKCM GKGRKARAKT TRSSTAGRNR SSNGEEHSNH AFQES
001: MSGAEDNKSS HAQLSSQIFL DLVDSVIADV ASECHRVARL GLDRDLDIVE EELRLSVEAR AKIADPSNNL ETNTKYVVDI FGQTHPPVAS EVFNCMNCGR
101: QIVAGRFAPH LEKCMGKGRK ARAKTTRSTT AAQNRNARRS PNPRYSPYPN SASENQLASG SPGVAGEDCS NFTVRENVKG D
101: QIVAGRFAPH LEKCMGKGRK ARAKTTRSTT AAQNRNARRS PNPRYSPYPN SASENQLASG SPGVAGEDCS NFTVRENVKG D
Arabidopsis Description
SAGA-associated factor 11 [Source:UniProtKB/TrEMBL;Acc:Q94BV2]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.