Factsheet for Bra006753.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002831.1-P
Bra023900.1-P
Bra025249.1-P
Bra028941.1-P
Bra031258.1-P
Bra035611.1-P
Bra039092.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58575.1	Bra023900.1-P	AT3G21175.1	21798944
AT5G58575.1	Bra031258.1-P	AT3G21175.1	21798944
AT5G58575.1	Bra025249.1-P	AT3G27100.1	21798944
AT5G58575.1	Bra039092.1-P	AT3G27100.1	21798944
AT5G58575.1	Bra002831.1-P	AT5G56250.1	21798944
AT5G58575.1	Bra028941.1-P	AT5G56250.1	21798944
AT5G58575.1	Bra035611.1-P	AT5G56250.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P28120_001	Banana	mitochondrion	53.03	43.75
CDY65780	Canola	cytosol, nucleus, plastid	96.97	39.75
AT5G58575.1	Thale cress	cytosol, nucleus, plastid	74.24	27.07
VIT_06s0004g06970.t01	Wine grape	cytosol	62.12	24.4
PGSC0003DMT400078237	Potato	nucleus	60.61	22.73
KRH30221	Soybean	cytosol	62.12	22.65
TraesCS1A01G223200.1	Wheat	cytosol, nucleus, plastid	53.03	22.15
TraesCS1D01G224800.1	Wheat	cytosol, nucleus, plastid	53.03	22.15
HORVU1Hr1G060100.2	Barley	cytosol, nucleus, plastid	51.52	21.94
KRG98249	Soybean	endoplasmic reticulum, plasma membrane	59.09	20.21
EES18037	Sorghum	cytosol	53.03	18.32
Os05t0351500-01	Rice	cytosol	51.52	18.18
TraesCS1B01G236500.1	Wheat	extracellular, golgi, plastid	53.03	16.83
Zm00001d038002_P001	Maize	nucleus	53.03	16.05
Solyc06g082160.2.1	Tomato	plastid	60.61	11.9

Protein Annotations

EnsemblPlants:Bra006753.1	EnsemblPlants:Bra006753.1-P	EnsemblPlantsGene:Bra006753	Gene3D:3.30.160.60	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	InterPro:SAGA_su_Sgf11	PANTHER:PTHR15117	PANTHER:PTHR15117:SF22	PFAM:PF08209
SEG:seg	UniParc:UPI0002540311	UniProt:M4CRB2	MapMan:15.3.4.2.1	:	:

Description

AT5G58575 (E=3e-006) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Sgf11, transcriptional regulation (InterPro:IPR013246); Has 148 Blast hits to 148 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 32; Plants - 16; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

Coordinates

chrA03:-:4911563..4911846

Molecular Weight (calculated)

7259.6 Da

IEP (calculated)

12.274

GRAVY (calculated)

-1.142

Length

66 amino acids

Sequence
(BLAST)

1: MNCGRQIVAG RFAPHLERCM GKGRKARAKA TRSTTASQNR NSRRSTSDNN QLASGPPGFE ENVRRA

Best Arabidopsis Sequence Match ( AT5G58575.1 )
(BLAST)

001: MSGAEDNKSS HAQLSSQIFL DLVDSVIADV ASECHRVARL GLDRDLDIVE EELRLSVEAR AKIADPSNNL ETNTKYVVDI FGQTHPPVAS EVFNCMNCGR
101: QIVAGRFAPH LEKCMGKGRK ARAKTTRSTT AAQNRNARRS PNPRYSPYPN SASENQLASG SPGVAGEDCS NFTVRENVKG D

Arabidopsis Description

SAGA-associated factor 11 [Source:UniProtKB/TrEMBL;Acc:Q94BV2]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.