Factsheet for Solyc06g082160.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g068110.2.1
Solyc06g076520.1.1
Solyc06g076540.1.1
Solyc06g076560.1.1
Solyc06g076570.1.1
Solyc07g045610.1.1
Solyc07g066200.2.1
Solyc09g059210.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58575.1	Solyc06g076520.1.1	AT1G07400.1	21798944
AT5G58575.1	Solyc06g076540.1.1	AT1G07400.1	21798944
AT5G58575.1	Solyc06g076560.1.1	AT1G07400.1	21798944
AT5G58575.1	Solyc06g076570.1.1	AT1G07400.1	21798944
AT5G58575.1	Solyc07g045610.1.1	AT1G07400.1	21798944
AT5G58575.1	Solyc09g059210.1.1	AT1G07400.1	21798944
AT5G58575.1	Solyc02g068110.2.1	AT3G27100.1	21798944
AT5G58575.1	Solyc07g066200.2.1	AT5G56250.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078237	Potato	nucleus	51.79	98.86
VIT_06s0004g06970.t01	Wine grape	cytosol	39.58	79.17
KRH30221	Soybean	cytosol	39.88	74.03
CDY65780	Canola	cytosol, nucleus, plastid	30.95	64.6
KRG98249	Soybean	endoplasmic reticulum, plasma membrane	36.61	63.73
AT5G58575.1	Thale cress	cytosol, nucleus, plastid	32.74	60.77
Bra006753.1-P	Field mustard	mitochondrion	11.9	60.61
GSMUA_Achr5P28120_001	Banana	mitochondrion	13.99	58.75
HORVU1Hr1G060100.2	Barley	cytosol, nucleus, plastid	24.7	53.55
TraesCS1A01G223200.1	Wheat	cytosol, nucleus, plastid	24.7	52.53
TraesCS1D01G224800.1	Wheat	cytosol, nucleus, plastid	24.7	52.53
Os05t0351500-01	Rice	cytosol	26.79	48.13
EES18037	Sorghum	cytosol	26.79	47.12
Zm00001d038002_P001	Maize	nucleus	27.08	41.74
TraesCS1B01G236500.1	Wheat	extracellular, golgi, plastid	25.3	40.87

Protein Annotations

EnsemblPlants:Solyc06g082160.2.1	EnsemblPlantsGene:Solyc06g082160.2	Gene3D:3.30.160.60	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0016020	GO:GO:0016021	InterPro:SAGA_su_Sgf11	PANTHER:PTHR15117	PANTHER:PTHR15117:SF22
PFAM:PF08209	SEG:seg	TMHMM:TMhelix	UniParc:UPI00027655A0	UniProt:K4CA75	MapMan:15.3.4.2.1

Description

SAGA-associated factor 11 [Source:UniProtKB/TrEMBL;Acc:K4CA75]

Coordinates

chr6:-:48070379..48074956

Molecular Weight (calculated)

37743.1 Da

IEP (calculated)

8.610

GRAVY (calculated)

-0.293

Length

336 amino acids

Sequence
(BLAST)

001: MIVATVAAAL PPISPHLNSN PGSFRDRKQL LFKLQKCKSI QHAAPIHAHI IKNGNPKTHF PFPPKQIPNF LNFLYHTISL IFIFLVSIDF KFIIVQGYKC
101: AYWKWVDDPR FFLGPNSRLD PKTEAHRPFC PCSQFRLQVF FLCRSLWCGF YCSLISEERL MSASNEDNIF QPQLSAHVFD ELLDSIITDV ASECHRVAKL
201: GLDRNLEEEE EELRLSAQAR ATVADPSNSS ETNGKYVVDI FGRTHPPVAT EIFECMNCGR SIMAGRFAPH LEKCMGKGRK ARLKATRSST AQNRYTRGSS
301: ASTYSPYSTP TSTSRLPNGS SGVSGHEYSN GSLEDL

Best Arabidopsis Sequence Match ( AT5G58575.1 )
(BLAST)

001: MSGAEDNKSS HAQLSSQIFL DLVDSVIADV ASECHRVARL GLDRDLDIVE EELRLSVEAR AKIADPSNNL ETNTKYVVDI FGQTHPPVAS EVFNCMNCGR
101: QIVAGRFAPH LEKCMGKGRK ARAKTTRSTT AAQNRNARRS PNPRYSPYPN SASENQLASG SPGVAGEDCS NFTVRENVKG D

Arabidopsis Description

SAGA-associated factor 11 [Source:UniProtKB/TrEMBL;Acc:Q94BV2]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.