Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 5
- golgi 4
- nucleus 2
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH30221 | Soybean | cytosol | 82.9 | 88.4 |
| VIT_06s0004g06970.t01 | Wine grape | cytosol | 66.84 | 76.79 |
| PGSC0003DMT400078237 | Potato | nucleus | 63.73 | 69.89 |
| CDY65780 | Canola | cytosol, nucleus, plastid | 50.26 | 60.25 |
| GSMUA_Achr5P28120_001 | Banana | mitochondrion | 24.87 | 60.0 |
| Bra006753.1-P | Field mustard | mitochondrion | 20.21 | 59.09 |
| AT5G58575.1 | Thale cress | cytosol, nucleus, plastid | 54.92 | 58.56 |
| HORVU1Hr1G060100.2 | Barley | cytosol, nucleus, plastid | 40.41 | 50.32 |
| TraesCS1A01G223200.1 | Wheat | cytosol, nucleus, plastid | 40.93 | 50.0 |
| TraesCS1D01G224800.1 | Wheat | cytosol, nucleus, plastid | 40.93 | 50.0 |
| Os05t0351500-01 | Rice | cytosol | 43.01 | 44.38 |
| EES18037 | Sorghum | cytosol | 40.41 | 40.84 |
| TraesCS1B01G236500.1 | Wheat | extracellular, golgi, plastid | 41.97 | 38.94 |
| Solyc06g082160.2.1 | Tomato | plastid | 63.73 | 36.61 |
| Zm00001d038002_P001 | Maize | nucleus | 40.41 | 35.78 |
Protein Annotations
| EMBL:ACUP02010855 | EMBL:ACUP02010856 | EnsemblPlants:KRG98249 | EnsemblPlantsGene:GLYMA_18G060000 | EntrezGene:100798460 | Gene3D:3.30.160.60 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:SAGA_su_Sgf11 | PANTHER:PTHR15117 |
| PANTHER:PTHR15117:SF22 | PFAM:PF08209 | ProteinID:KRG98249 | ProteinID:KRG98249.1 | SEG:seg | UniParc:UPI000295F6CD |
| UniProt:K7MQ78 | MapMan:15.3.4.2.1 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr18:+:5333840..5340454
Molecular Weight (calculated)
21385.1 Da
IEP (calculated)
6.667
GRAVY (calculated)
-0.334
Length
193 amino acids
Sequence
(BLAST)
(BLAST)
001: MLVTVVYLLS YLYFFVLWNN SDVNVPKLSY FFLDLLDSII VDVASECHRV ARLGLDSNLE EEDEELKLSA QARVRVADPS NSNEANGKYV VDIFGQTHPP
101: VANEIFDCLN CGRSIMAGRF APHLEKCMGK GRKARLKVTR SSTATQNRYS RGGPSPGSTH SPYSNYSTNS MNRLAYGTST FAGEEHSNGT LES
101: VANEIFDCLN CGRSIMAGRF APHLEKCMGK GRKARLKVTR SSTATQNRYS RGGPSPGSTH SPYSNYSTNS MNRLAYGTST FAGEEHSNGT LES
001: MSGAEDNKSS HAQLSSQIFL DLVDSVIADV ASECHRVARL GLDRDLDIVE EELRLSVEAR AKIADPSNNL ETNTKYVVDI FGQTHPPVAS EVFNCMNCGR
101: QIVAGRFAPH LEKCMGKGRK ARAKTTRSTT AAQNRNARRS PNPRYSPYPN SASENQLASG SPGVAGEDCS NFTVRENVKG D
101: QIVAGRFAPH LEKCMGKGRK ARAKTTRSTT AAQNRNARRS PNPRYSPYPN SASENQLASG SPGVAGEDCS NFTVRENVKG D
Arabidopsis Description
SAGA-associated factor 11 [Source:UniProtKB/TrEMBL;Acc:Q94BV2]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.