Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G459600.1 | Wheat | mitochondrion | 81.44 | 79.0 |
| TraesCS3A01G423700.2 | Wheat | cytosol, mitochondrion, nucleus, plastid | 75.77 | 73.13 |
| EES04106 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 57.22 | 54.41 |
| Zm00001d012047_P001 | Maize | mitochondrion | 48.97 | 53.37 |
| Zm00001d042361_P002 | Maize | plastid | 50.52 | 52.13 |
| KRH45224 | Soybean | cytosol, nucleus, plastid | 31.44 | 35.47 |
| VIT_04s0023g00400.t01 | Wine grape | cytosol | 25.77 | 34.72 |
| KRH01538 | Soybean | cytosol, mitochondrion | 30.93 | 34.68 |
| VIT_05s0062g01090.t01 | Wine grape | cytosol, mitochondrion, nucleus | 28.35 | 34.59 |
| PGSC0003DMT400055683 | Potato | plastid | 26.8 | 33.77 |
| PGSC0003DMT400011671 | Potato | cytosol | 27.32 | 31.74 |
| Solyc11g008880.1.1 | Tomato | mitochondrion | 25.77 | 29.41 |
| CDY55580 | Canola | cytosol | 22.68 | 28.95 |
| KRH00915 | Soybean | mitochondrion | 26.29 | 28.65 |
| CDX69448 | Canola | cytosol | 22.16 | 28.29 |
| Bra008619.1-P | Field mustard | cytosol | 22.16 | 28.1 |
| PGSC0003DMT400041700 | Potato | mitochondrion | 25.26 | 28.0 |
| KRH40309 | Soybean | mitochondrion | 24.74 | 27.75 |
| AT5G16490.1 | Thale cress | cytosol, extracellular | 21.13 | 26.8 |
| CDY38108 | Canola | cytosol | 21.13 | 26.28 |
| KRG92567 | Soybean | cytosol, golgi, plastid | 20.62 | 25.0 |
| HORVU5Hr1G121080.2 | Barley | endoplasmic reticulum, golgi | 27.84 | 23.28 |
| CDX85503 | Canola | cytosol | 10.31 | 22.99 |
| GSMUA_Achr10P... | Banana | plastid | 29.9 | 8.13 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G093570.4 | EnsemblPlantsGene:HORVU3Hr1G093570 | Gene3D:3.90.810.10 | InterPro:CRIB_dom | InterPro:CRIB_dom_sf | InterPro:IPR000095 |
| InterPro:IPR036936 | PANTHER:PTHR23177 | PANTHER:PTHR23177:SF53 | PFAM:PF00786 | PFscan:PS50108 | SEG:seg |
| SMART:SM00285 | UniParc:UPI00029666ED | UniProt:M0Y8R5 | MapMan:27.4.5.2 | : | : |
Description
No Description!
Coordinates
chrchr3H:-:643145384..643146947
Molecular Weight (calculated)
20098.2 Da
IEP (calculated)
9.781
GRAVY (calculated)
-0.431
Length
194 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSREQQRGR RDRFIVIPFS STCRSAASVD IVQSKKPQGA GGGGEGTSAA AVVRPAKGES LSLVARLLRG FKNLSHQIFA VYDEDDEEEE PEMVIGLPTD
101: VKHVAHIGWD GSTSTTSSVR SWNRAAPPPG TTAPAAASAS TSASASSSSA APPPPQAQPP SLSARQFELA MAAQASAAAT TSTSGAARRH RHYS
101: VKHVAHIGWD GSTSTTSSVR SWNRAAPPPG TTAPAAASAS TSASASSSSA APPPPQAQPP SLSARQFELA MAAQASAAAT TSTSGAARRH RHYS
001: MTSPMKGLLK GLRYIARIFE DEKEPEMQIG IPTDVKHVAH IGWEGPSATT PSWMHDFKPT DQTKTETKGT SNKKPGSSGE KHRKGRRKTS TGNNSPTESP
101: SRVGGSVRPS KRNTGKQREQ NTGSGSESGS GLELPQQTDQ FVVPKQSKQK KSKGSATGGG EPPPSNEPSN KKETDISVRA VYPCAGLGSS TGR
101: SRVGGSVRPS KRNTGKQREQ NTGSGSESGS GLELPQQTDQ FVVPKQSKQK KSKGSATGGG EPPPSNEPSN KKETDISVRA VYPCAGLGSS TGR
Arabidopsis Description
RIC5CRIB domain-containing protein RIC5 [Source:UniProtKB/Swiss-Prot;Acc:F4J424]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.