Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plasma membrane 3
- cytosol 3
- plastid 1
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400055683 | Potato | plastid | 41.92 | 45.45 |
| VIT_05s0062g01090.t01 | Wine grape | cytosol, mitochondrion, nucleus | 40.72 | 42.77 |
| KRH45224 | Soybean | cytosol, nucleus, plastid | 42.52 | 41.28 |
| KRH01538 | Soybean | cytosol, mitochondrion | 42.52 | 41.04 |
| PGSC0003DMT400041700 | Potato | mitochondrion | 34.13 | 32.57 |
| Zm00001d012047_P001 | Maize | mitochondrion | 32.34 | 30.34 |
| Zm00001d042361_P002 | Maize | plastid | 34.13 | 30.32 |
| TraesCS5B01G536700.1 | Wheat | cytosol | 30.54 | 30.18 |
| TraesCS4A01G337000.1 | Wheat | cytosol, plastid | 28.14 | 29.94 |
| TraesCS5B01G536800.1 | Wheat | cytosol, plastid | 30.54 | 29.82 |
| TraesCS4A01G337200.1 | Wheat | cytosol | 30.54 | 29.48 |
| TraesCS4A01G337100.1 | Wheat | mitochondrion, plastid | 29.34 | 29.34 |
| TraesCS5D01G534200.1 | Wheat | cytosol | 29.34 | 28.99 |
| Os03t0847900-01 | Rice | cytosol, peroxisome, plastid | 28.74 | 28.92 |
| EES04106 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 34.13 | 27.94 |
| HORVU3Hr1G093570.4 | Barley | mitochondrion | 31.74 | 27.32 |
| TraesCS5D01G534300.1 | Wheat | cytosol | 28.14 | 27.17 |
| TraesCS3A01G423700.2 | Wheat | cytosol, mitochondrion, nucleus, plastid | 31.74 | 26.37 |
| TraesCS3B01G459600.1 | Wheat | mitochondrion | 30.54 | 25.5 |
| OQU90622 | Sorghum | cytosol | 26.95 | 25.14 |
| Zm00001d034836_P001 | Maize | cytosol, nucleus, peroxisome | 28.14 | 24.61 |
| HORVU5Hr1G121080.2 | Barley | endoplasmic reticulum, golgi | 27.54 | 19.83 |
| GSMUA_Achr10P... | Banana | plastid | 31.74 | 7.43 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400011671 | EnsemblPlantsGene:PGSC0003DMG402004586 | Gene3D:3.90.810.10 | InterPro:CRIB_dom | InterPro:CRIB_dom_sf | InterPro:IPR000095 |
| InterPro:IPR036936 | PANTHER:PTHR23177 | PANTHER:PTHR23177:SF53 | PFAM:PF00786 | PFscan:PS50108 | PGSC:PGSC0003DMG402004586 |
| SEG:seg | UniParc:UPI00029544BF | UniProt:M0ZZY9 | MapMan:27.4.5.2 | : | : |
Description
Wiscott-Aldrich syndrome, C-terminal [Source:PGSC_GENE;Acc:PGSC0003DMG402004586]
Coordinates
chr12:+:59532327..59534474
Molecular Weight (calculated)
19149.7 Da
IEP (calculated)
6.793
GRAVY (calculated)
-0.531
Length
167 amino acids
Sequence
(BLAST)
(BLAST)
001: MKEKSVEKFF ILPFFVGCSS ESSVRVTNQL VETKNSTQIT KRQEGEESSS NVKMKSFWGF WAMTRPRFSQ NVQRLKRHFK GFSQLFARRE EVEEEETEIE
101: IGYPTDVKHL THIGWDGSTT INPIKGWENL KPPEIISFPS ISIKQFELAM AAQAGEPIDV INTNNCA
101: IGYPTDVKHL THIGWDGSTT INPIKGWENL KPPEIISFPS ISIKQFELAM AAQAGEPIDV INTNNCA
001: MRDRMERLVV LPFSIGCISV SSVAVLSPLS KPHHHHSRQV IREQEEEDNM KNVFKFLAVS KPEISIGINR IFKSFKTISQ LFADKDEEKE EVETSGMEIG
101: VPTNVKHVSH IGWESGLTAA TGPGKGWEDL IPPELLAAAA SKKEINPHLH PTL
101: VPTNVKHVSH IGWESGLTAA TGPGKGWEDL IPPELLAAAA SKKEINPHLH PTL
Arabidopsis Description
RIC4CRIB domain-containing protein RIC4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFD5]
SUBAcon: [extracellular,cytosol]
SUBAcon: [extracellular,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.