Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 3
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g008880.1.1 | Tomato | mitochondrion | 82.86 | 85.29 |
| VIT_04s0023g00400.t01 | Wine grape | cytosol | 32.57 | 39.58 |
| CDX85503 | Canola | cytosol | 19.43 | 39.08 |
| AT5G16490.1 | Thale cress | cytosol, extracellular | 32.57 | 37.25 |
| KRH40309 | Soybean | mitochondrion | 36.57 | 36.99 |
| CDY38108 | Canola | cytosol | 32.57 | 36.54 |
| KRH00915 | Soybean | mitochondrion | 37.14 | 36.52 |
| KRG92567 | Soybean | cytosol, golgi, plastid | 32.57 | 35.62 |
| PGSC0003DMT400055683 | Potato | plastid | 30.86 | 35.06 |
| PGSC0003DMT400011671 | Potato | cytosol | 32.57 | 34.13 |
| Bra008619.1-P | Field mustard | cytosol | 29.71 | 33.99 |
| CDX69448 | Canola | cytosol | 29.14 | 33.55 |
| CDY55580 | Canola | cytosol | 29.14 | 33.55 |
| TraesCS4A01G337100.1 | Wheat | mitochondrion, plastid | 24.57 | 25.75 |
| Zm00001d042361_P002 | Maize | plastid | 27.43 | 25.53 |
| TraesCS3A01G423700.2 | Wheat | cytosol, mitochondrion, nucleus, plastid | 29.14 | 25.37 |
| Os03t0847900-01 | Rice | cytosol, peroxisome, plastid | 24.0 | 25.3 |
| HORVU3Hr1G093570.4 | Barley | mitochondrion | 28.0 | 25.26 |
| TraesCS4A01G337000.1 | Wheat | cytosol, plastid | 22.29 | 24.84 |
| Zm00001d012047_P001 | Maize | mitochondrion | 25.14 | 24.72 |
| EES04106 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 28.0 | 24.02 |
| TraesCS5B01G536800.1 | Wheat | cytosol, plastid | 23.43 | 23.98 |
| TraesCS5D01G534200.1 | Wheat | cytosol | 22.86 | 23.67 |
| TraesCS5B01G536700.1 | Wheat | cytosol | 22.29 | 23.08 |
| TraesCS3B01G459600.1 | Wheat | mitochondrion | 25.71 | 22.5 |
| OQU90622 | Sorghum | cytosol | 22.86 | 22.35 |
| TraesCS5D01G534300.1 | Wheat | cytosol | 21.71 | 21.97 |
| TraesCS4A01G337200.1 | Wheat | cytosol | 21.14 | 21.39 |
| Zm00001d034836_P001 | Maize | cytosol, nucleus, peroxisome | 22.29 | 20.42 |
| HORVU5Hr1G121080.2 | Barley | endoplasmic reticulum, golgi | 22.29 | 16.81 |
| GSMUA_Achr10P... | Banana | plastid | 32.57 | 7.99 |
Protein Annotations
| EntrezGene:102597755 | MapMan:27.4.5.2 | InterPro:CRIB_dom | ncoils:Coil | GO:GO:0000003 | GO:GO:0005575 |
| GO:GO:0005623 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009653 | GO:GO:0009856 |
| GO:GO:0009860 | GO:GO:0009987 | GO:GO:0010215 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016049 |
| GO:GO:0016324 | GO:GO:0017157 | GO:GO:0030154 | GO:GO:0030833 | GO:GO:0040007 | GO:GO:0051650 |
| InterPro:IPR000095 | UniProt:M1BBU3 | PFAM:PF00786 | EnsemblPlantsGene:PGSC0003DMG400016167 | PGSC:PGSC0003DMG400016167 | EnsemblPlants:PGSC0003DMT400041700 |
| PFscan:PS50108 | PANTHER:PTHR23177 | PANTHER:PTHR23177:SF53 | SMART:SM00285 | UniParc:UPI000295B351 | RefSeq:XP_006353236.1 |
| SEG:seg | : | : | : | : | : |
Description
Wiscott-Aldrich syndrome, C-terminal [Source:PGSC_GENE;Acc:PGSC0003DMG400016167]
Coordinates
chr11:+:2960731..2962935
Molecular Weight (calculated)
19997.5 Da
IEP (calculated)
5.080
GRAVY (calculated)
-0.727
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MRYRMERFVL LPFSVGCISE SSVAIGHQQH KSSSIHQPNL IPTKMLEEEK EEEEDDEKNL EGENLKNQLG LPKFQRLFKN FKNFSHLFVD KDQMEEEEEM
101: GMEIGLPTDV KHVTHIGIDG GEANTSLVLN STKTNWDYLN LKSPNHDLLT QFSSNFSFPN MANHSPNHTS MATSS
101: GMEIGLPTDV KHVTHIGIDG GEANTSLVLN STKTNWDYLN LKSPNHDLLT QFSSNFSFPN MANHSPNHTS MATSS
001: MRDRMERLVV LPFSIGCISV SSVAVLSPLS KPHHHHSRQV IREQEEEDNM KNVFKFLAVS KPEISIGINR IFKSFKTISQ LFADKDEEKE EVETSGMEIG
101: VPTNVKHVSH IGWESGLTAA TGPGKGWEDL IPPELLAAAA SKKEINPHLH PTL
101: VPTNVKHVSH IGWESGLTAA TGPGKGWEDL IPPELLAAAA SKKEINPHLH PTL
Arabidopsis Description
RIC4CRIB domain-containing protein RIC4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFD5]
SUBAcon: [extracellular,cytosol]
SUBAcon: [extracellular,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.