Factsheet for VIT_04s0023g00400.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1
plasma membrane 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plasma membrane
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40309	Soybean	mitochondrion	56.94	47.4
KRH00915	Soybean	mitochondrion	57.64	46.63
CDX85503	Canola	cytosol	25.69	42.53
VIT_05s0062g01090.t01	Wine grape	cytosol, mitochondrion, nucleus	45.83	41.51
AT5G16490.1	Thale cress	cytosol, extracellular	43.06	40.52
CDY38108	Canola	cytosol	41.67	38.46
KRG92567	Soybean	cytosol, golgi, plastid	41.67	37.5
CDX69448	Canola	cytosol	38.19	36.18
CDY55580	Canola	cytosol	38.19	36.18
Bra008619.1-P	Field mustard	cytosol	38.19	35.95
PGSC0003DMT400041700	Potato	mitochondrion	39.58	32.57
Solyc11g008880.1.1	Tomato	mitochondrion	38.19	32.35
TraesCS4A01G337100.1	Wheat	mitochondrion, plastid	33.33	28.74
TraesCS4A01G337200.1	Wheat	cytosol	33.33	27.75
TraesCS4A01G337000.1	Wheat	cytosol, plastid	29.86	27.39
TraesCS5B01G536700.1	Wheat	cytosol	31.94	27.22
Zm00001d012047_P001	Maize	mitochondrion	33.33	26.97
TraesCS5D01G534200.1	Wheat	cytosol	31.25	26.63
Os03t0847900-01	Rice	cytosol, peroxisome, plastid	30.56	26.51
HORVU3Hr1G093570.4	Barley	mitochondrion	34.72	25.77
TraesCS3B01G459600.1	Wheat	mitochondrion	35.42	25.5
TraesCS5D01G534300.1	Wheat	cytosol	30.56	25.43
TraesCS5B01G536800.1	Wheat	cytosol, plastid	29.86	25.15
Zm00001d042361_P002	Maize	plastid	32.64	25.0
TraesCS3A01G423700.2	Wheat	cytosol, mitochondrion, nucleus, plastid	34.72	24.88
Zm00001d034836_P001	Maize	cytosol, nucleus, peroxisome	32.64	24.61
EES04106	Sorghum	cytosol, mitochondrion, nucleus, plastid	34.03	24.02
OQU90622	Sorghum	cytosol	27.78	22.35
HORVU5Hr1G121080.2	Barley	endoplasmic reticulum, golgi	29.86	18.53
GSMUA_Achr10P...	Banana	plastid	41.67	8.42

Protein Annotations

EntrezGene:100259906	wikigene:100259906	MapMan:27.4.5.2	Gene3D:3.90.810.10	ProteinID:CBI17643	ProteinID:CBI17643.3
InterPro:CRIB_dom	InterPro:CRIB_dom_sf	UniProt:D7SPR4	EMBL:FN594959	GO:GO:0003674	GO:GO:0005488
GO:GO:0008270	InterPro:IPR000095	InterPro:IPR036936	EntrezGene:LOC100259906	wikigene:LOC100259906	PFAM:PF00786
PFscan:PS50108	PANTHER:PTHR23177	PANTHER:PTHR23177:SF53	SMART:SM00285	UniParc:UPI0001BE14B4	ArrayExpress:VIT_04s0023g00400
EnsemblPlantsGene:VIT_04s0023g00400	EnsemblPlants:VIT_04s0023g00400.t01	RefSeq:XP_002278899	RefSeq:XP_002278899.1	:	:

Description

No Description!

Coordinates

chr4:+:16612765..16613548

Molecular Weight (calculated)

16175.1 Da

IEP (calculated)

5.216

GRAVY (calculated)

-0.449

Length

144 amino acids

Sequence
(BLAST)

001: MERLVVLPFT AGCVSYASVA VSEQQPRRSK PDTNSSTIRA QEEDQESFSD SMKNSFRLLA LPKPNISTGF HRLVKGFKNF SQFFVPKEDM EDSDEEMQIG
101: FPTDVKHVTH IGWDGSATTN PIKGWDNLIP PELLSLPAVS LRQF

Best Arabidopsis Sequence Match ( AT5G16490.1 )
(BLAST)

001: MRDRMERLVV LPFSIGCISV SSVAVLSPLS KPHHHHSRQV IREQEEEDNM KNVFKFLAVS KPEISIGINR IFKSFKTISQ LFADKDEEKE EVETSGMEIG
101: VPTNVKHVSH IGWESGLTAA TGPGKGWEDL IPPELLAAAA SKKEINPHLH PTL

Arabidopsis Description

RIC4CRIB domain-containing protein RIC4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFD5]
SUBAcon: [extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.