CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00915	Soybean	mitochondrion	88.44	85.96
VIT_04s0023g00400.t01	Wine grape	cytosol	47.4	56.94
KRG92567	Soybean	cytosol, golgi, plastid	45.09	48.75
CDX85503	Canola	cytosol	23.12	45.98
AT5G16490.1	Thale cress	cytosol, extracellular	36.42	41.18
CDY38108	Canola	cytosol	35.84	39.74
Solyc11g008880.1.1	Tomato	mitochondrion	38.73	39.41
CDX69448	Canola	cytosol	34.1	38.82
CDY55580	Canola	cytosol	34.1	38.82
Bra008619.1-P	Field mustard	cytosol	34.1	38.56
KRH45224	Soybean	cytosol, nucleus, plastid	36.42	36.63
PGSC0003DMT400041700	Potato	mitochondrion	36.99	36.57
KRH01538	Soybean	cytosol, mitochondrion	36.42	36.42
Os03t0847900-01	Rice	cytosol, peroxisome, plastid	30.06	31.33
TraesCS4A01G337100.1	Wheat	mitochondrion, plastid	30.06	31.14
TraesCS4A01G337000.1	Wheat	cytosol, plastid	27.17	29.94
Zm00001d034836_P001	Maize	cytosol, nucleus, peroxisome	32.95	29.84
OQU90622	Sorghum	cytosol	30.06	29.05
TraesCS5D01G534200.1	Wheat	cytosol	27.17	27.81
TraesCS5B01G536700.1	Wheat	cytosol	26.59	27.22
TraesCS5B01G536800.1	Wheat	cytosol, plastid	26.59	26.9
TraesCS4A01G337200.1	Wheat	cytosol	26.59	26.59
Zm00001d012047_P001	Maize	mitochondrion	26.01	25.28
Zm00001d042361_P002	Maize	plastid	27.17	25.0
TraesCS5D01G534300.1	Wheat	cytosol	24.86	24.86
HORVU3Hr1G093570.4	Barley	mitochondrion	27.75	24.74
EES04106	Sorghum	cytosol, mitochondrion, nucleus, plastid	27.75	23.53
TraesCS3A01G423700.2	Wheat	cytosol, mitochondrion, nucleus, plastid	27.17	23.38
TraesCS3B01G459600.1	Wheat	mitochondrion	26.59	23.0
HORVU5Hr1G121080.2	Barley	endoplasmic reticulum, golgi	29.48	21.98
GSMUA_Achr10P...	Banana	plastid	35.26	8.56

Protein Annotations

EMBL:ACUP02006035	EMBL:BT090820	EnsemblPlants:KRH40309	EnsemblPlantsGene:GLYMA_09G250900	EntrezGene:100306617	InterPro:CRIB_dom
InterPro:IPR000095	PANTHER:PTHR23177	PANTHER:PTHR23177:SF53	PFAM:PF00786	PFscan:PS50108	ProteinID:KRH40309
ProteinID:KRH40309.1	SEG:seg	SMART:SM00285	UniParc:UPI0001B152F1	UniProt:C6T067	MapMan:27.4.5.2

Description

hypothetical protein

Coordinates

chr9:-:47149700..47151886

Molecular Weight (calculated)

19151.8 Da

IEP (calculated)

5.264

GRAVY (calculated)

-0.423

Length

173 amino acids

Sequence
(BLAST)

001: MRQRMERLVI LPFSAGCISE ASVAVGVPYP RRSKPDTNAP PPTIKRSKSV EDSEILSGES MKNSLRLLDV VPKPNLSNGF NRLVKGFKNI SQLFVEKDEF
101: EEVEIDMEIG CPTDVQHVTH IGWDGIATSA ADPIMKGWDA LIPHELLSLS SSQSLQHHQD LPNLDAKHDD SPN

Best Arabidopsis Sequence Match ( AT5G16490.1 )
(BLAST)

001: MRDRMERLVV LPFSIGCISV SSVAVLSPLS KPHHHHSRQV IREQEEEDNM KNVFKFLAVS KPEISIGINR IFKSFKTISQ LFADKDEEKE EVETSGMEIG
101: VPTNVKHVSH IGWESGLTAA TGPGKGWEDL IPPELLAAAA SKKEINPHLH PTL

Arabidopsis Description

RIC4CRIB domain-containing protein RIC4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFD5]
SUBAcon: [extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.