CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40309	Soybean	mitochondrion	85.96	88.44
VIT_04s0023g00400.t01	Wine grape	cytosol	46.63	57.64
KRG92567	Soybean	cytosol, golgi, plastid	44.38	49.38
CDX85503	Canola	cytosol	21.91	44.83
AT5G16490.1	Thale cress	cytosol, extracellular	35.39	41.18
CDY38108	Canola	cytosol	35.39	40.38
Solyc11g008880.1.1	Tomato	mitochondrion	37.64	39.41
CDX69448	Canola	cytosol	33.15	38.82
CDY55580	Canola	cytosol	33.15	38.82
Bra008619.1-P	Field mustard	cytosol	33.15	38.56
KRH45224	Soybean	cytosol, nucleus, plastid	35.96	37.21
PGSC0003DMT400041700	Potato	mitochondrion	36.52	37.14
KRH01538	Soybean	cytosol, mitochondrion	35.96	36.99
Os03t0847900-01	Rice	cytosol, peroxisome, plastid	32.02	34.34
TraesCS4A01G337100.1	Wheat	mitochondrion, plastid	30.9	32.93
TraesCS4A01G337000.1	Wheat	cytosol, plastid	27.53	31.21
Zm00001d034836_P001	Maize	cytosol, nucleus, peroxisome	32.58	30.37
OQU90622	Sorghum	cytosol	30.34	30.17
TraesCS5B01G536700.1	Wheat	cytosol	28.09	29.59
TraesCS5D01G534200.1	Wheat	cytosol	28.09	29.59
TraesCS5B01G536800.1	Wheat	cytosol, plastid	26.97	28.07
TraesCS4A01G337200.1	Wheat	cytosol	26.97	27.75
Zm00001d012047_P001	Maize	mitochondrion	26.97	26.97
TraesCS5D01G534300.1	Wheat	cytosol	25.84	26.59
HORVU3Hr1G093570.4	Barley	mitochondrion	28.65	26.29
Zm00001d042361_P002	Maize	plastid	26.97	25.53
TraesCS3A01G423700.2	Wheat	cytosol, mitochondrion, nucleus, plastid	28.09	24.88
EES04106	Sorghum	cytosol, mitochondrion, nucleus, plastid	28.09	24.51
TraesCS3B01G459600.1	Wheat	mitochondrion	27.53	24.5
HORVU5Hr1G121080.2	Barley	endoplasmic reticulum, golgi	30.34	23.28
GSMUA_Achr10P...	Banana	plastid	34.27	8.56

Protein Annotations

EMBL:ACUP02011481	EnsemblPlants:KRH00915	EnsemblPlantsGene:GLYMA_18G241600	EntrezGene:100787187	InterPro:CRIB_dom	InterPro:IPR000095
PANTHER:PTHR23177	PANTHER:PTHR23177:SF53	PFAM:PF00786	PFscan:PS50108	ProteinID:KRH00915	ProteinID:KRH00915.1
SEG:seg	UniParc:UPI000233E58C	UniProt:I1N3Y7	MapMan:27.4.5.2	:	:

Description

hypothetical protein

Coordinates

chr18:+:53016024..53018485

Molecular Weight (calculated)

19564.3 Da

IEP (calculated)

5.631

GRAVY (calculated)

-0.384

Length

178 amino acids

Sequence
(BLAST)

001: MRQRMDRLVI LPFSAGCISE ASVAVGVPHP RRSKPDTNAS PPTIKRSKSV EDSEILSGES MKNSLRLLDV VPKSNLSYGF NRLVKGFKNF SQLFVEKDEF
101: EEVEIDMEIG CPTDVQHVTH IGWDGIATSA ADPMKGWDAL IPPELLSLSS SQSLKHLDLP NLEAKHDEAS SPVKPSPN

Best Arabidopsis Sequence Match ( AT5G16490.1 )
(BLAST)

001: MRDRMERLVV LPFSIGCISV SSVAVLSPLS KPHHHHSRQV IREQEEEDNM KNVFKFLAVS KPEISIGINR IFKSFKTISQ LFADKDEEKE EVETSGMEIG
101: VPTNVKHVSH IGWESGLTAA TGPGKGWEDL IPPELLAAAA SKKEINPHLH PTL

Arabidopsis Description

RIC4CRIB domain-containing protein RIC4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFD5]
SUBAcon: [extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.