CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034836_P001	Maize	cytosol, nucleus, peroxisome	72.07	67.54
TraesCS4A01G337100.1	Wheat	mitochondrion, plastid	50.84	54.49
Os03t0847900-01	Rice	cytosol, peroxisome, plastid	49.16	53.01
TraesCS5B01G536700.1	Wheat	cytosol	49.16	52.07
TraesCS5B01G536800.1	Wheat	cytosol, plastid	47.49	49.71
TraesCS4A01G337000.1	Wheat	cytosol, plastid	43.58	49.68
TraesCS5D01G534200.1	Wheat	cytosol	45.25	47.93
TraesCS4A01G337200.1	Wheat	cytosol	43.58	45.09
TraesCS5D01G534300.1	Wheat	cytosol	43.58	45.09
HORVU5Hr1G121080.2	Barley	endoplasmic reticulum, golgi	45.25	34.91
KRH00915	Soybean	mitochondrion	30.17	30.34
CDY55580	Canola	cytosol	25.7	30.26
CDX69448	Canola	cytosol	25.7	30.26
Bra008619.1-P	Field mustard	cytosol	25.7	30.07
KRH40309	Soybean	mitochondrion	29.05	30.06
PGSC0003DMT400055683	Potato	plastid	25.14	29.22
KRH45224	Soybean	cytosol, nucleus, plastid	27.93	29.07
AT5G16490.1	Thale cress	cytosol, extracellular	24.58	28.76
EES04106	Sorghum	cytosol, mitochondrion, nucleus, plastid	32.4	28.43
VIT_05s0062g01090.t01	Wine grape	cytosol, mitochondrion, nucleus	25.14	28.3
VIT_04s0023g00400.t01	Wine grape	cytosol	22.35	27.78
CDX85503	Canola	cytosol	13.41	27.59
KRH01538	Soybean	cytosol, mitochondrion	26.26	27.17
PGSC0003DMT400011671	Potato	cytosol	25.14	26.95
CDY38108	Canola	cytosol	22.35	25.64
KRG92567	Soybean	cytosol, golgi, plastid	22.91	25.62
Solyc11g008880.1.1	Tomato	mitochondrion	24.02	25.29
PGSC0003DMT400041700	Potato	mitochondrion	22.35	22.86
GSMUA_Achr10P...	Banana	plastid	29.61	7.43

Protein Annotations

EnsemblPlants:OQU90622	EnsemblPlantsGene:SORBI_3001G014000	EntrezGene:8060880	InterPro:CRIB_dom	InterPro:IPR000095	PANTHER:PTHR23177
PANTHER:PTHR23177:SF18	PFAM:PF00786	PFscan:PS50108	ProteinID:OQU90622	ProteinID:OQU90622.1	SEG:seg
unigene:Sbi.10276	UniParc:UPI000B4264E5	UniProt:A0A1Z5S3T9	MapMan:27.4.5.2	:	:

Description

hypothetical protein

Coordinates

chr1:-:1267598..1268219

Molecular Weight (calculated)

18117.0 Da

IEP (calculated)

5.172

GRAVY (calculated)

-0.184

Length

179 amino acids

Sequence
(BLAST)

001: MKDRRGSSGG GGDRFAVFPF SMGCMSQSAV SVADPSEKKA QGDPSSSSSS AAAAVTTANT AAQVPSAGSS EEGAVKAAAA TPGLVATGVS RLMKGIRSLS
101: HMFAAYDGDE EEEEEREMVI GYPTDVQHVG HIGWDGHNNT VGGAGAAMAS MVNAFSLPSS LSLHHLDMAM DRAAAHASA

Best Arabidopsis Sequence Match ( AT5G16490.1 )
(BLAST)

001: MRDRMERLVV LPFSIGCISV SSVAVLSPLS KPHHHHSRQV IREQEEEDNM KNVFKFLAVS KPEISIGINR IFKSFKTISQ LFADKDEEKE EVETSGMEIG
101: VPTNVKHVSH IGWESGLTAA TGPGKGWEDL IPPELLAAAA SKKEINPHLH PTL

Arabidopsis Description

RIC4CRIB domain-containing protein RIC4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFD5]
SUBAcon: [extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.