Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 6
- cytosol 2
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400011671 | Potato | cytosol | 45.45 | 41.92 |
| VIT_05s0062g01090.t01 | Wine grape | cytosol, mitochondrion, nucleus | 38.31 | 37.11 |
| KRH45224 | Soybean | cytosol, nucleus, plastid | 38.31 | 34.3 |
| KRH01538 | Soybean | cytosol, mitochondrion | 38.31 | 34.1 |
| PGSC0003DMT400041700 | Potato | mitochondrion | 35.06 | 30.86 |
| Zm00001d042361_P002 | Maize | plastid | 37.01 | 30.32 |
| Zm00001d012047_P001 | Maize | mitochondrion | 32.47 | 28.09 |
| Os03t0847900-01 | Rice | cytosol, peroxisome, plastid | 29.22 | 27.11 |
| EES04106 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 35.71 | 26.96 |
| HORVU3Hr1G093570.4 | Barley | mitochondrion | 33.77 | 26.8 |
| TraesCS4A01G337000.1 | Wheat | cytosol, plastid | 27.27 | 26.75 |
| TraesCS4A01G337100.1 | Wheat | mitochondrion, plastid | 27.27 | 25.15 |
| OQU90622 | Sorghum | cytosol | 29.22 | 25.14 |
| TraesCS3A01G423700.2 | Wheat | cytosol, mitochondrion, nucleus, plastid | 32.47 | 24.88 |
| TraesCS4A01G337200.1 | Wheat | cytosol | 27.92 | 24.86 |
| TraesCS5D01G534200.1 | Wheat | cytosol | 27.27 | 24.85 |
| TraesCS3B01G459600.1 | Wheat | mitochondrion | 31.82 | 24.5 |
| TraesCS5B01G536700.1 | Wheat | cytosol | 25.97 | 23.67 |
| TraesCS5B01G536800.1 | Wheat | cytosol, plastid | 25.97 | 23.39 |
| Zm00001d034836_P001 | Maize | cytosol, nucleus, peroxisome | 28.57 | 23.04 |
| TraesCS5D01G534300.1 | Wheat | cytosol | 24.03 | 21.39 |
| HORVU5Hr1G121080.2 | Barley | endoplasmic reticulum, golgi | 25.97 | 17.24 |
| GSMUA_Achr10P... | Banana | plastid | 34.42 | 7.43 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400055683 | EnsemblPlantsGene:PGSC0003DMG400021621 | Gene3D:3.90.810.10 | InterPro:CRIB_dom | InterPro:CRIB_dom_sf | InterPro:IPR000095 |
| InterPro:IPR036936 | PANTHER:PTHR23177 | PANTHER:PTHR23177:SF53 | PFAM:PF00786 | PFscan:PS50108 | PGSC:PGSC0003DMG400021621 |
| SMART:SM00285 | UniParc:UPI0002955DE6 | UniProt:M1BYC0 | MapMan:27.4.5.2 | : | : |
Description
Wiscott-Aldrich syndrome, C-terminal [Source:PGSC_GENE;Acc:PGSC0003DMG400021621]
Coordinates
chr9:+:61240616..61241743
Molecular Weight (calculated)
17471.7 Da
IEP (calculated)
9.089
GRAVY (calculated)
-0.477
Length
154 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKFVVFPFS LGCVSESSVP VVNTNRSHNT NNSQLNHLPT KRQVGDQSPS KVKINGVLVR RRISQGVDTF KRNFRGFYQL FVYKDEIEEM EMEIGYPTDV
101: KHVTHIGWDG STKINPMIKN WDNSKESDLL SFPSISIQQF ELALASQAGG SSRF
101: KHVTHIGWDG STKINPMIKN WDNSKESDLL SFPSISIQQF ELALASQAGG SSRF
001: MRDRMERLVV LPFSIGCISV SSVAVLSPLS KPHHHHSRQV IREQEEEDNM KNVFKFLAVS KPEISIGINR IFKSFKTISQ LFADKDEEKE EVETSGMEIG
101: VPTNVKHVSH IGWESGLTAA TGPGKGWEDL IPPELLAAAA SKKEINPHLH PTL
101: VPTNVKHVSH IGWESGLTAA TGPGKGWEDL IPPELLAAAA SKKEINPHLH PTL
Arabidopsis Description
RIC4CRIB domain-containing protein RIC4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFD5]
SUBAcon: [extracellular,cytosol]
SUBAcon: [extracellular,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.