Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_04s0023g00400.t01 | Wine grape | cytosol | 41.51 | 45.83 |
| KRH45224 | Soybean | cytosol, nucleus, plastid | 45.28 | 41.86 |
| KRH01538 | Soybean | cytosol, mitochondrion | 45.28 | 41.62 |
| PGSC0003DMT400011671 | Potato | cytosol | 42.77 | 40.72 |
| PGSC0003DMT400055683 | Potato | plastid | 37.11 | 38.31 |
| TraesCS4A01G337000.1 | Wheat | cytosol, plastid | 29.56 | 29.94 |
| Zm00001d042361_P002 | Maize | plastid | 35.22 | 29.79 |
| Os03t0847900-01 | Rice | cytosol, peroxisome, plastid | 30.82 | 29.52 |
| EES04106 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 37.74 | 29.41 |
| TraesCS5B01G536800.1 | Wheat | cytosol, plastid | 31.45 | 29.24 |
| Zm00001d012047_P001 | Maize | mitochondrion | 32.08 | 28.65 |
| TraesCS5D01G534200.1 | Wheat | cytosol | 30.19 | 28.4 |
| HORVU3Hr1G093570.4 | Barley | mitochondrion | 34.59 | 28.35 |
| TraesCS3B01G459600.1 | Wheat | mitochondrion | 34.59 | 27.5 |
| TraesCS3A01G423700.2 | Wheat | cytosol, mitochondrion, nucleus, plastid | 34.59 | 27.36 |
| TraesCS5B01G536700.1 | Wheat | cytosol | 28.93 | 27.22 |
| TraesCS4A01G337100.1 | Wheat | mitochondrion, plastid | 28.3 | 26.95 |
| TraesCS4A01G337200.1 | Wheat | cytosol | 27.67 | 25.43 |
| OQU90622 | Sorghum | cytosol | 28.3 | 25.14 |
| TraesCS5D01G534300.1 | Wheat | cytosol | 27.04 | 24.86 |
| Zm00001d034836_P001 | Maize | cytosol, nucleus, peroxisome | 28.3 | 23.56 |
| HORVU5Hr1G121080.2 | Barley | endoplasmic reticulum, golgi | 30.19 | 20.69 |
| GSMUA_Achr10P... | Banana | plastid | 38.99 | 8.7 |
Protein Annotations
| EntrezGene:100242907 | wikigene:100242907 | MapMan:27.4.5.2 | Gene3D:3.90.810.10 | ProteinID:CBI39441 | ProteinID:CBI39441.3 |
| InterPro:CRIB_dom | InterPro:CRIB_dom_sf | UniProt:D7U9M7 | EMBL:FN596745 | InterPro:IPR000095 | InterPro:IPR036936 |
| EntrezGene:LOC100242907 | wikigene:LOC100242907 | PFAM:PF00786 | PFscan:PS50108 | PANTHER:PTHR23177 | PANTHER:PTHR23177:SF53 |
| SMART:SM00285 | TIGR:TC62647 | UniParc:UPI00019833B7 | ArrayExpress:VIT_05s0062g01090 | EnsemblPlantsGene:VIT_05s0062g01090 | EnsemblPlants:VIT_05s0062g01090.t01 |
| unigene:Vvi.16274 | RefSeq:XP_002267101 | RefSeq:XP_002267101.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr5:-:19742568..19743497
Molecular Weight (calculated)
17984.0 Da
IEP (calculated)
10.423
GRAVY (calculated)
-0.308
Length
159 amino acids
Sequence
(BLAST)
(BLAST)
001: MRDRMERLVV LPFTMGCVSE SSVSVGGALQ LKKPKSEPNP PVTRRKEGEE RPSGLRLKAS FRFSSRLQKL IRTTLKSFSH LFVYKEVMEM EMEIGFPTDV
101: KHVTHIGWDG SSTNPIKGWE NLRTPELLAN FPTISLRQFE LAMAAQAHDP LLVTSSKLI
101: KHVTHIGWDG SSTNPIKGWE NLRTPELLAN FPTISLRQFE LAMAAQAHDP LLVTSSKLI
001: MRDRMERLVV LPFSIGCISV SSVAVLSPLS KPHHHHSRQV IREQEEEDNM KNVFKFLAVS KPEISIGINR IFKSFKTISQ LFADKDEEKE EVETSGMEIG
101: VPTNVKHVSH IGWESGLTAA TGPGKGWEDL IPPELLAAAA SKKEINPHLH PTL
101: VPTNVKHVSH IGWESGLTAA TGPGKGWEDL IPPELLAAAA SKKEINPHLH PTL
Arabidopsis Description
RIC4CRIB domain-containing protein RIC4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFD5]
SUBAcon: [extracellular,cytosol]
SUBAcon: [extracellular,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.