Factsheet for Zm00001d042361_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012047_P001	Maize	mitochondrion	65.43	69.1
EES04106	Sorghum	cytosol, mitochondrion, nucleus, plastid	74.47	68.63
TraesCS3A01G423700.2	Wheat	cytosol, mitochondrion, nucleus, plastid	54.79	51.24
TraesCS3B01G459600.1	Wheat	mitochondrion	54.26	51.0
HORVU3Hr1G093570.4	Barley	mitochondrion	52.13	50.52
PGSC0003DMT400055683	Potato	plastid	30.32	37.01
VIT_05s0062g01090.t01	Wine grape	cytosol, mitochondrion, nucleus	29.79	35.22
PGSC0003DMT400011671	Potato	cytosol	30.32	34.13
VIT_04s0023g00400.t01	Wine grape	cytosol	25.0	32.64
KRH45224	Soybean	cytosol, nucleus, plastid	29.26	31.98
KRH01538	Soybean	cytosol, mitochondrion	29.26	31.79
Zm00001d034836_P001	Maize	cytosol, nucleus, peroxisome	30.32	29.84
CDX69448	Canola	cytosol	23.94	29.61
CDY55580	Canola	cytosol	23.94	29.61
Bra008619.1-P	Field mustard	cytosol	23.94	29.41
Solyc11g008880.1.1	Tomato	mitochondrion	26.6	29.41
AT5G16490.1	Thale cress	cytosol, extracellular	23.4	28.76
PGSC0003DMT400041700	Potato	mitochondrion	25.53	27.43
KRH40309	Soybean	mitochondrion	25.0	27.17
KRH00915	Soybean	mitochondrion	25.53	26.97
KRG92567	Soybean	cytosol, golgi, plastid	22.34	26.25
CDY38108	Canola	cytosol	20.74	25.0
CDX85503	Canola	cytosol	10.64	22.99
GSMUA_Achr10P...	Banana	plastid	29.26	7.71

Protein Annotations

EnsemblPlants:Zm00001d042361_P002	EnsemblPlants:Zm00001d042361_T002	EnsemblPlantsGene:Zm00001d042361	EntrezGene:100285421	Gene3D:3.90.810.10	InterPro:CRIB_dom
InterPro:CRIB_dom_sf	InterPro:IPR000095	InterPro:IPR036936	ncoils:Coil	PANTHER:PTHR23177	PANTHER:PTHR23177:SF53
PFAM:PF00786	PFscan:PS50108	PFscan:PS51257	ProteinID:ONM35141.1	SEG:seg	SMART:SM00285
UniParc:UPI000221B981	UniProt:A0A1D6N370	MapMan:27.4.5.2	:	:	:

Description

Wiscott-Aldrich syndrome%2C C-terminal

Coordinates

chr3:+:163203413..163204855

Molecular Weight (calculated)

19560.7 Da

IEP (calculated)

7.237

GRAVY (calculated)

-0.534

Length

188 amino acids

Sequence
(BLAST)

001: MSREQPSPAP AQRRFIAIPS FSSSGCRSHS SVDVVDTARH AGNGKKPHPQ GAETGAVPGG ASAGGKGESL VARLLRGFKN LSQIFAVYED EEEEEEREMV
101: IGLPTDVKHV AHIGWDGSTS TTSSLRSWNR AAPPPPASSS SSAPAAAAPK EQEQYPLPLP ALSMQQFELA MAAQAGGGGG GAAHRRHS

Best Arabidopsis Sequence Match ( AT4G28556.1 )
(BLAST)

001: MQLGMSSTKM KSLLKGLRYI SQVFAIEGEK EEEMQIGNPT DVKHVAHIGW DGPSDNATAP SWMNDFKSSP VMESIQGLGE DDSSVKCQSE FGGRTRDLPK
101: LPKSTRKSSS EKGSPTKERS DKTKRRTSNK GTSSSRRTKD EDSTSSSRRT TKDEDSSLSQ HSAGLPEVPK KSKRKKSKEA GNGGSSRSSR ISEADYMSDT
201: GSDRSMPQFE DDRNGF

Arabidopsis Description

RIC7CRIB domain-containing protein RIC7 [Source:UniProtKB/Swiss-Prot;Acc:Q1G3K8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.