Factsheet for Bra008619.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69448	Canola	cytosol	99.35	100.0
VIT_04s0023g00400.t01	Wine grape	cytosol	35.95	38.19
KRG92567	Soybean	cytosol, golgi, plastid	36.6	35.0
KRH40309	Soybean	mitochondrion	38.56	34.1
KRH00915	Soybean	mitochondrion	38.56	33.15
Solyc11g008880.1.1	Tomato	mitochondrion	34.64	31.18
Os03t0847900-01	Rice	cytosol, peroxisome, plastid	33.33	30.72
PGSC0003DMT400041700	Potato	mitochondrion	33.99	29.71
TraesCS4A01G337000.1	Wheat	cytosol, plastid	30.07	29.3
TraesCS4A01G337100.1	Wheat	mitochondrion, plastid	30.72	28.14
TraesCS5B01G536700.1	Wheat	cytosol	30.07	27.22
TraesCS5B01G536800.1	Wheat	cytosol, plastid	30.07	26.9
TraesCS5D01G534200.1	Wheat	cytosol	29.41	26.63
Zm00001d012047_P001	Maize	mitochondrion	30.72	26.4
TraesCS4A01G337200.1	Wheat	cytosol	29.41	26.01
OQU90622	Sorghum	cytosol	30.07	25.7
TraesCS5D01G534300.1	Wheat	cytosol	28.76	25.43
Zm00001d042361_P002	Maize	plastid	29.41	23.94
TraesCS3B01G459600.1	Wheat	mitochondrion	30.72	23.5
Zm00001d034836_P001	Maize	cytosol, nucleus, peroxisome	28.76	23.04
TraesCS3A01G423700.2	Wheat	cytosol, mitochondrion, nucleus, plastid	30.07	22.89
EES04106	Sorghum	cytosol, mitochondrion, nucleus, plastid	30.07	22.55
HORVU3Hr1G093570.4	Barley	mitochondrion	28.1	22.16
HORVU5Hr1G121080.2	Barley	endoplasmic reticulum, golgi	28.76	18.97
GSMUA_Achr10P...	Banana	plastid	34.64	7.43

Protein Annotations

MapMan:27.4.5.2	Gene3D:3.90.810.10	EnsemblPlantsGene:Bra008619	EnsemblPlants:Bra008619.1	EnsemblPlants:Bra008619.1-P	InterPro:CRIB_dom
InterPro:CRIB_dom_sf	GO:GO:0000003	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006810
GO:GO:0008150	GO:GO:0009653	GO:GO:0009856	GO:GO:0009860	GO:GO:0009987	GO:GO:0010215
GO:GO:0016020	GO:GO:0016043	GO:GO:0016049	GO:GO:0016324	GO:GO:0017157	GO:GO:0030154
GO:GO:0030833	GO:GO:0040007	GO:GO:0051650	InterPro:IPR000095	InterPro:IPR036936	UniProt:M4CWM2
PFAM:PF00786	PFscan:PS50108	PANTHER:PTHR23177	PANTHER:PTHR23177:SF53	UniParc:UPI0002544A51	SEG:seg

Description

AT5G16490 (E=1e-035) RIC4 | RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4); protein binding

Coordinates

chrA10:+:13119331..13119972

Molecular Weight (calculated)

17111.2 Da

IEP (calculated)

5.972

GRAVY (calculated)

-0.438

Length

153 amino acids

Sequence
(BLAST)

001: MRDRMERLVV LPFSVGCISD SSVDVLSPLS KHHHHHHHSS QGIRDQEEEE NMKNVFKFLA VSKPEISTGI NRLFKSFKTI SQLFVAYKEE EESEEGETSG
101: LMEIGAPTNV KHVSHIGWES SREWKDLIPP ELLAAAAAKE DATAGVAHLQ PTL

Best Arabidopsis Sequence Match ( AT5G16490.1 )
(BLAST)

001: MRDRMERLVV LPFSIGCISV SSVAVLSPLS KPHHHHSRQV IREQEEEDNM KNVFKFLAVS KPEISIGINR IFKSFKTISQ LFADKDEEKE EVETSGMEIG
101: VPTNVKHVSH IGWESGLTAA TGPGKGWEDL IPPELLAAAA SKKEINPHLH PTL

Arabidopsis Description

RIC4CRIB domain-containing protein RIC4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFD5]
SUBAcon: [extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.