CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042361_P002	Maize	plastid	68.63	74.47
HORVU3Hr1G093570.4	Barley	mitochondrion	54.41	57.22
TraesCS3B01G459600.1	Wheat	mitochondrion	53.43	54.5
TraesCS3A01G423700.2	Wheat	cytosol, mitochondrion, nucleus, plastid	52.45	53.23
VIT_05s0062g01090.t01	Wine grape	cytosol, mitochondrion, nucleus	29.41	37.74
PGSC0003DMT400055683	Potato	plastid	26.96	35.71
PGSC0003DMT400011671	Potato	cytosol	27.94	34.13
VIT_04s0023g00400.t01	Wine grape	cytosol	24.02	34.03
KRH45224	Soybean	cytosol, nucleus, plastid	27.45	32.56
OQU90622	Sorghum	cytosol	28.43	32.4
KRH01538	Soybean	cytosol, mitochondrion	27.45	32.37
Solyc11g008880.1.1	Tomato	mitochondrion	25.49	30.59
CDX69448	Canola	cytosol	22.55	30.26
CDY55580	Canola	cytosol	22.55	30.26
Bra008619.1-P	Field mustard	cytosol	22.55	30.07
AT5G16490.1	Thale cress	cytosol, extracellular	21.57	28.76
KRH00915	Soybean	mitochondrion	24.51	28.09
PGSC0003DMT400041700	Potato	mitochondrion	24.02	28.0
KRH40309	Soybean	mitochondrion	23.53	27.75
KRG92567	Soybean	cytosol, golgi, plastid	20.59	26.25
CDY38108	Canola	cytosol	19.61	25.64
CDX85503	Canola	cytosol	9.8	22.99
GSMUA_Achr10P...	Banana	plastid	26.96	7.71

Protein Annotations

EnsemblPlants:EES04106	EnsemblPlantsGene:SORBI_3003G402300	EntrezGene:8079786	Gene3D:3.90.810.10	InterPro:CRIB_dom	InterPro:CRIB_dom_sf
InterPro:IPR000095	InterPro:IPR036936	PANTHER:PTHR23177	PANTHER:PTHR23177:SF18	PFAM:PF00786	PFscan:PS50108
ProteinID:EES04106	ProteinID:EES04106.1	RefSeq:XP_002458986.1	SEG:seg	SMART:SM00285	UniParc:UPI0001A8554B
UniProt:C5XG85	MapMan:27.4.5.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:71060480..71062254

Molecular Weight (calculated)

21295.8 Da

IEP (calculated)

7.814

GRAVY (calculated)

-0.537

Length

204 amino acids

Sequence
(BLAST)

001: MSREQQTPPP PRRFIAIPFS SGCRSHSSVD VVDTARHGKK PHPQGAEIGA VPGGASVRPP PPAGSKGESL VARLLRGFKN LSQIFAVYDE DEDEEEEREM
101: VIGLPTDVKH VAHIGWDGST STTTSLRSWN RAAPPPPASS SSSSSSSSSA AAAPPQAQAQ EQYPLPLPMP ALSMRQFELA MAAQAAGGGA TTTSGGGAAH
201: RRHS

Best Arabidopsis Sequence Match ( AT5G16490.1 )
(BLAST)

001: MRDRMERLVV LPFSIGCISV SSVAVLSPLS KPHHHHSRQV IREQEEEDNM KNVFKFLAVS KPEISIGINR IFKSFKTISQ LFADKDEEKE EVETSGMEIG
101: VPTNVKHVSH IGWESGLTAA TGPGKGWEDL IPPELLAAAA SKKEINPHLH PTL

Arabidopsis Description

RIC4CRIB domain-containing protein RIC4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFD5]
SUBAcon: [extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.