CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85503	Canola	cytosol	48.72	87.36
AT5G16490.1	Thale cress	cytosol, extracellular	66.67	67.97
CDX69448	Canola	cytosol	64.1	65.79
CDY55580	Canola	cytosol	64.1	65.79
VIT_04s0023g00400.t01	Wine grape	cytosol	38.46	41.67
KRH40309	Soybean	mitochondrion	39.74	35.84
KRH00915	Soybean	mitochondrion	40.38	35.39
KRG92567	Soybean	cytosol, golgi, plastid	35.9	35.0
PGSC0003DMT400041700	Potato	mitochondrion	36.54	32.57
Solyc11g008880.1.1	Tomato	mitochondrion	35.26	32.35
TraesCS4A01G337000.1	Wheat	cytosol, plastid	28.85	28.66
TraesCS5D01G534200.1	Wheat	cytosol	30.77	28.4
Os03t0847900-01	Rice	cytosol, peroxisome, plastid	30.13	28.31
TraesCS4A01G337100.1	Wheat	mitochondrion, plastid	29.49	27.54
TraesCS5B01G536800.1	Wheat	cytosol, plastid	30.13	27.49
TraesCS5B01G536700.1	Wheat	cytosol	29.49	27.22
TraesCS5D01G534300.1	Wheat	cytosol	29.49	26.59
TraesCS4A01G337200.1	Wheat	cytosol	28.21	25.43
Zm00001d034836_P001	Maize	cytosol, nucleus, peroxisome	28.21	23.04
OQU90622	Sorghum	cytosol	25.64	22.35
TraesCS3B01G459600.1	Wheat	mitochondrion	28.21	22.0
Zm00001d012047_P001	Maize	mitochondrion	24.36	21.35
HORVU3Hr1G093570.4	Barley	mitochondrion	26.28	21.13
TraesCS3A01G423700.2	Wheat	cytosol, mitochondrion, nucleus, plastid	26.92	20.9
Zm00001d042361_P002	Maize	plastid	25.0	20.74
EES04106	Sorghum	cytosol, mitochondrion, nucleus, plastid	25.64	19.61
HORVU5Hr1G121080.2	Barley	endoplasmic reticulum, golgi	28.21	18.97
GSMUA_Achr10P...	Banana	plastid	35.26	7.71

Protein Annotations

EnsemblPlants:CDY38108	EnsemblPlantsGene:GSBRNA2T00065385001	InterPro:CRIB_dom	InterPro:IPR000095	PANTHER:PTHR23177	PANTHER:PTHR23177:SF53
PFAM:PF00786	PFscan:PS50108	ProteinID:CDY38108	ProteinID:CDY38108.1	SEG:seg	UniParc:UPI0004EE2758
UniProt:A0A078HMS4	MapMan:27.4.5.2	:	:	:	:

Description

BnaC02g06650DBnaC02g06650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HMS4]

Coordinates

chrLK032416:+:172829..173741

Molecular Weight (calculated)

17221.4 Da

IEP (calculated)

6.679

GRAVY (calculated)

-0.417

Length

156 amino acids

Sequence
(BLAST)

001: MRDRMERLVV LPFSVGCISD SSVAVLSPLS RSHHHHHSPQ GIRDQEQEEN MKNVFNFLAV SKPEISTGVN RLFKSFKTIS QLFAYKEEES DDGEKSGMEI
101: GVPTNVKHVS HIGWESGLTA VAGPGKGWED LIPPELFAAA ATTKQGVNNP HLHHTL

Best Arabidopsis Sequence Match ( AT5G16490.1 )
(BLAST)

001: MRDRMERLVV LPFSIGCISV SSVAVLSPLS KPHHHHSRQV IREQEEEDNM KNVFKFLAVS KPEISIGINR IFKSFKTISQ LFADKDEEKE EVETSGMEIG
101: VPTNVKHVSH IGWESGLTAA TGPGKGWEDL IPPELLAAAA SKKEINPHLH PTL

Arabidopsis Description

RIC4CRIB domain-containing protein RIC4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFD5]
SUBAcon: [extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.