Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G337100.1 | Wheat | mitochondrion, plastid | 79.88 | 80.84 |
| TraesCS5D01G534300.1 | Wheat | cytosol | 71.01 | 69.36 |
| Os03t0847900-01 | Rice | cytosol, peroxisome, plastid | 55.03 | 56.02 |
| HORVU5Hr1G121080.2 | Barley | endoplasmic reticulum, golgi | 74.56 | 54.31 |
| OQU90622 | Sorghum | cytosol | 47.93 | 45.25 |
| Zm00001d034836_P001 | Maize | cytosol, nucleus, peroxisome | 46.75 | 41.36 |
| VIT_04s0023g00400.t01 | Wine grape | cytosol | 26.63 | 31.25 |
| CDY38108 | Canola | cytosol | 28.4 | 30.77 |
| VIT_05s0062g01090.t01 | Wine grape | cytosol, mitochondrion, nucleus | 28.4 | 30.19 |
| CDX85503 | Canola | cytosol | 15.38 | 29.89 |
| CDX69448 | Canola | cytosol | 26.63 | 29.61 |
| Bra008619.1-P | Field mustard | cytosol | 26.63 | 29.41 |
| PGSC0003DMT400011671 | Potato | cytosol | 28.99 | 29.34 |
| CDY55580 | Canola | cytosol | 26.04 | 28.95 |
| AT5G16490.1 | Thale cress | cytosol, extracellular | 25.44 | 28.1 |
| KRH00915 | Soybean | mitochondrion | 29.59 | 28.09 |
| PGSC0003DMT400055683 | Potato | plastid | 24.85 | 27.27 |
| KRH40309 | Soybean | mitochondrion | 27.81 | 27.17 |
| KRH01538 | Soybean | cytosol, mitochondrion | 27.81 | 27.17 |
| KRH45224 | Soybean | cytosol, nucleus, plastid | 27.22 | 26.74 |
| KRG92567 | Soybean | cytosol, golgi, plastid | 24.85 | 26.25 |
| PGSC0003DMT400041700 | Potato | mitochondrion | 23.67 | 22.86 |
| Solyc11g008880.1.1 | Tomato | mitochondrion | 22.49 | 22.35 |
| GSMUA_Achr10P... | Banana | plastid | 31.95 | 7.57 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G534200.1 | EnsemblPlantsGene:TraesCS5D01G534200 | InterPro:CRIB_dom | InterPro:IPR000095 | PANTHER:PTHR23177 | PANTHER:PTHR23177:SF18 |
| PFAM:PF00786 | PFscan:PS50108 | PFscan:PS51257 | SEG:seg | TIGR:cd00132 | MapMan:27.4.5.2 |
Description
No Description!
Coordinates
chr5D:+:548460586..548461197
Molecular Weight (calculated)
17625.6 Da
IEP (calculated)
4.665
GRAVY (calculated)
-0.334
Length
169 amino acids
Sequence
(BLAST)
(BLAST)
001: MKDRRGGAGF PFSIGCMSQS AVAVADPLHK KPQPPQPAKQ ADNPSSSSTT TTTMAATTLD RGAGEESSEE KTRTAAAASG VLTAGVQRLL RGIKTFFAAY
101: DGEEEDDDEE REIVIGYPTD VQHVGHIGWD GINKVGVGMA GAFSLPSSLS LRQLEIAMDP GAATTACIN
101: DGEEEDDDEE REIVIGYPTD VQHVGHIGWD GINKVGVGMA GAFSLPSSLS LRQLEIAMDP GAATTACIN
001: MKDRMERLLI LPFSLGCSTQ SCVAVATTHQ QKKPNQLIKR REESHENGSF EKEYTKMDRN GANMLDGRVE SDAKGSFRKD YTKMENNNNG ANISDGIYRI
101: IRSFKSFSHF FIRYEEETKE REAEMEIGFP TDVKHLSHIG VDGTMTTFDN TSSSFPFSGF HLTGTVV
101: IRSFKSFSHF FIRYEEETKE REAEMEIGFP TDVKHLSHIG VDGTMTTFDN TSSSFPFSGF HLTGTVV
Arabidopsis Description
RIC2RIC2 [Source:UniProtKB/TrEMBL;Acc:A0A178WAB0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.