Factsheet for GSMUA_Achr10P28950_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0023g00400.t01	Wine grape	cytosol	8.42	41.67
CDX85503	Canola	cytosol	5.05	41.38
VIT_05s0062g01090.t01	Wine grape	cytosol, mitochondrion, nucleus	8.7	38.99
KRH45224	Soybean	cytosol, nucleus, plastid	9.12	37.79
KRH01538	Soybean	cytosol, mitochondrion	8.98	36.99
KRH40309	Soybean	mitochondrion	8.56	35.26
CDY38108	Canola	cytosol	7.71	35.26
CDY55580	Canola	cytosol	7.43	34.87
Bra008619.1-P	Field mustard	cytosol	7.43	34.64
PGSC0003DMT400055683	Potato	plastid	7.43	34.42
KRH00915	Soybean	mitochondrion	8.56	34.27
CDX69448	Canola	cytosol	7.29	34.21
Os03t0847900-01	Rice	cytosol, peroxisome, plastid	7.85	33.73
Solyc11g008880.1.1	Tomato	mitochondrion	7.85	32.94
AT5G16490.1	Thale cress	cytosol, extracellular	7.01	32.68
PGSC0003DMT400041700	Potato	mitochondrion	7.99	32.57
TraesCS4A01G337000.1	Wheat	cytosol, plastid	7.15	32.48
TraesCS5D01G534200.1	Wheat	cytosol	7.57	31.95
PGSC0003DMT400011671	Potato	cytosol	7.43	31.74
KRG92567	Soybean	cytosol, golgi, plastid	7.01	31.25
Zm00001d012047_P001	Maize	mitochondrion	7.71	30.9
TraesCS4A01G337100.1	Wheat	mitochondrion, plastid	7.01	29.94
HORVU3Hr1G093570.4	Barley	mitochondrion	8.13	29.9
OQU90622	Sorghum	cytosol	7.43	29.61
TraesCS3B01G459600.1	Wheat	mitochondrion	8.27	29.5
Zm00001d042361_P002	Maize	plastid	7.71	29.26
TraesCS5B01G536700.1	Wheat	cytosol	6.87	28.99
TraesCS4A01G337200.1	Wheat	cytosol	7.01	28.9
TraesCS5D01G534300.1	Wheat	cytosol	6.87	28.32
Zm00001d034836_P001	Maize	cytosol, nucleus, peroxisome	7.57	28.27
TraesCS5B01G536800.1	Wheat	cytosol, plastid	6.73	28.07
TraesCS3A01G423700.2	Wheat	cytosol, mitochondrion, nucleus, plastid	7.85	27.86
EES04106	Sorghum	cytosol, mitochondrion, nucleus, plastid	7.71	26.96
HORVU5Hr1G121080.2	Barley	endoplasmic reticulum, golgi	7.57	23.28

Protein Annotations

Gene3D:1.25.40.10	MapMan:27.4.5.2	InterPro:CRIB_dom	InterPro:DYW_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0008270	EnsemblPlantsGene:GSMUA_Achr10G28950_001	EnsemblPlants:GSMUA_Achr10P28950_001	EnsemblPlants:GSMUA_Achr10T28950_001	InterPro:IPR000095
InterPro:IPR002885	InterPro:IPR011990	UniProt:M0RMB9	PFAM:PF01535	PFAM:PF13041	PFAM:PF14432
PFscan:PS50108	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF727	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI000296A7CC	SEG:seg	:	:	:

Description

Putative Pentatricopeptide repeat-containing protein At4g37170 [Source:GMGC_GENE;Acc:GSMUA_Achr10G28950_001]

Coordinates

chr10:+:31614545..31618816

Molecular Weight (calculated)

79297.6 Da

IEP (calculated)

8.726

GRAVY (calculated)

-0.169

Length

713 amino acids

Sequence
(BLAST)

001: MLPRTIAGPA TLTGFSNSPR LLRRPIAILP LPSPLPFSLT GNASFPTLVF PSSPQPSPPE DATSAFVRFL RASSRSVKSL LDAGLLHSVA VKAGLGQDDR
101: VRTGLLSLYC RCGCVDLAGK LFDEIRERDV LAWTLLISGR ARAGQYREGL EINGTEFDVV LLNSILDFYA KCGAFACTKN LFRTMNEKDA ISWNIMIGAG
201: QMEHGLHAIA LQILHTMVDM GPRFNHISFS AMVAGYVQNG MGEGALELLR DMFQQGVKDA RKAFDNSRVT NVVLWTSIIG SYASHGRAAE ALHLFEQMSE
301: EKIVPNEISF VHHCYQLVEK WEEASKLRRM MHEKGSHPEA AEIYSYLESL IGRLKEMGYA SRTDLVLHDV EEEQRESILN FHSEKLAVAY GIMSTPKGIP
401: IRVMKNLRVC ADCHEAIKYI SQATCREIIL RDAYRFHHFS NGKCSYLGRS SVLQRTARGG YWSLQMTRML LVVTVISLSG YPFRILDLVW LVLGVQGRKG
501: KQQASSWPSR EVKAAIAQDD RRLRRIRFPT HEGSWVALQI VTLAAMRDRR IDRFILLPFS VGCVSESSVA VYENQPKRAQ RDGAPNTPSG DGDRRQSTVE
601: VKNSSAVLAF PKPNISAGIQ KLVKSFKSLS QHVVVLYKDE DEEVEMEIGF PTDVQHVAHI GCDGFNSSMS GNKNWDRAPE LLPLPSSMQQ YELAVAAQAG
701: APPPYGPRAS WPQ

Best Arabidopsis Sequence Match ( AT2G33760.1 )
(BLAST)

001: MTTKVAANSA AYEAIVRAGP RVKQLQQVHA HLIVTGYGRS RSLLTKLITL ACSARAIAYT HLLFLSVPLP DDFLFNSVIK STSKLRLPLH CVAYYRRMLS
101: SNVSPSNYTF TSVIKSCADL SALRIGKGVH CHAVVSGFGL DTYVQAALVT FYSKCGDMEG ARQVFDRMPE KSIVAWNSLV SGFEQNGLAD EAIQVFYQMR
201: ESGFEPDSAT FVSLLSACAQ TGAVSLGSWV HQYIISEGLD LNVKLGTALI NLYSRCGDVG KAREVFDKMK ETNVAAWTAM ISAYGTHGYG QQAVELFNKM
301: EDDCGPIPNN VTFVAVLSAC AHAGLVEEGR SVYKRMTKSY RLIPGVEHHV CMVDMLGRAG FLDEAYKFIH QLDATGKATA PALWTAMLGA CKMHRNYDLG
401: VEIAKRLIAL EPDNPGHHVM LSNIYALSGK TDEVSHIRDG MMRNNLRKQV GYSVIEVENK TYMFSMGDES HQETGEIYRY LETLISRCKE IGYAPVSEEV
501: MHQVEEEEKE FALRYHSEKL AVAFGLLKTV DVAITIVKNL RICEDCHSAF KYISIVSNRQ ITVRDKLRFH HFQNGSCSCL DYW

Arabidopsis Description

PCMP-H6Pentatricopeptide repeat-containing protein At2g33760 [Source:UniProtKB/Swiss-Prot;Acc:P93011]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.