CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

plastid 3
nucleus 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01538	Soybean	cytosol, mitochondrion	91.86	91.33
VIT_05s0062g01090.t01	Wine grape	cytosol, mitochondrion, nucleus	41.86	45.28
PGSC0003DMT400011671	Potato	cytosol	41.28	42.52
PGSC0003DMT400055683	Potato	plastid	34.3	38.31
KRH40309	Soybean	mitochondrion	36.63	36.42
KRH00915	Soybean	mitochondrion	37.21	35.96
KRG92567	Soybean	cytosol, golgi, plastid	30.23	32.5
HORVU3Hr1G093570.4	Barley	mitochondrion	35.47	31.44
Os03t0847900-01	Rice	cytosol, peroxisome, plastid	29.65	30.72
TraesCS4A01G337000.1	Wheat	cytosol, plastid	27.91	30.57
Zm00001d012047_P001	Maize	mitochondrion	30.81	29.78
TraesCS3B01G459600.1	Wheat	mitochondrion	34.3	29.5
Zm00001d034836_P001	Maize	cytosol, nucleus, peroxisome	32.56	29.32
Zm00001d042361_P002	Maize	plastid	31.98	29.26
TraesCS5D01G534300.1	Wheat	cytosol	29.07	28.9
TraesCS3A01G423700.2	Wheat	cytosol, mitochondrion, nucleus, plastid	33.14	28.36
OQU90622	Sorghum	cytosol	29.07	27.93
EES04106	Sorghum	cytosol, mitochondrion, nucleus, plastid	32.56	27.45
TraesCS5B01G536700.1	Wheat	cytosol	26.74	27.22
TraesCS5D01G534200.1	Wheat	cytosol	26.74	27.22
TraesCS4A01G337200.1	Wheat	cytosol	27.33	27.17
TraesCS4A01G337100.1	Wheat	mitochondrion, plastid	25.58	26.35
TraesCS5B01G536800.1	Wheat	cytosol, plastid	26.16	26.32
HORVU5Hr1G121080.2	Barley	endoplasmic reticulum, golgi	27.33	20.26
GSMUA_Achr10P...	Banana	plastid	37.79	9.12

Protein Annotations

EMBL:ACUP02005011	EMBL:BT092064	EnsemblPlants:KRH45224	EnsemblPlantsGene:GLYMA_08G259300	EntrezGene:100527236	InterPro:CRIB_dom
InterPro:IPR000095	PANTHER:PTHR23177	PANTHER:PTHR23177:SF53	PFAM:PF00786	PFscan:PS50108	ProteinID:KRH45224
ProteinID:KRH45224.1	SEG:seg	SMART:SM00285	UniParc:UPI0001B15545	UniProt:C6T3Q3	MapMan:27.4.5.2

Description

hypothetical protein

Coordinates

chr8:-:23410004..23412121

Molecular Weight (calculated)

18975.0 Da

IEP (calculated)

9.729

GRAVY (calculated)

-0.448

Length

172 amino acids

Sequence
(BLAST)

001: MRNRMERLVV PCSFSCASHS SVELGAPKGP KEDSKGTIVS RRQEGQDRSI IKAKMKRGKP SGFLVLPKPN VAAGIQRIIK GIKSLSQLFV YKKEDVEEME
101: PEMEIGYPTD VKHVTHIGID GSTITNNVKG WDNMKAPELL SLSPISFKQF ELAMASQAQY PLINDPNSSK CG

Best Arabidopsis Sequence Match ( AT5G16490.1 )
(BLAST)

001: MRDRMERLVV LPFSIGCISV SSVAVLSPLS KPHHHHSRQV IREQEEEDNM KNVFKFLAVS KPEISIGINR IFKSFKTISQ LFADKDEEKE EVETSGMEIG
101: VPTNVKHVSH IGWESGLTAA TGPGKGWEDL IPPELLAAAA SKKEINPHLH PTL

Arabidopsis Description

RIC4CRIB domain-containing protein RIC4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFD5]
SUBAcon: [extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.