CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40309	Soybean	mitochondrion	48.75	45.09
KRH00915	Soybean	mitochondrion	49.38	44.38
VIT_04s0023g00400.t01	Wine grape	cytosol	37.5	41.67
CDX85503	Canola	cytosol	21.25	39.08
AT5G16490.1	Thale cress	cytosol, extracellular	36.25	37.91
CDX69448	Canola	cytosol	35.0	36.84
Bra008619.1-P	Field mustard	cytosol	35.0	36.6
CDY55580	Canola	cytosol	34.38	36.18
CDY38108	Canola	cytosol	35.0	35.9
Solyc11g008880.1.1	Tomato	mitochondrion	35.0	32.94
PGSC0003DMT400041700	Potato	mitochondrion	35.62	32.57
KRH45224	Soybean	cytosol, nucleus, plastid	32.5	30.23
KRH01538	Soybean	cytosol, mitochondrion	32.5	30.06
TraesCS4A01G337000.1	Wheat	cytosol, plastid	27.5	28.03
TraesCS4A01G337200.1	Wheat	cytosol	28.75	26.59
Os03t0847900-01	Rice	cytosol, peroxisome, plastid	27.5	26.51
TraesCS5B01G536700.1	Wheat	cytosol	27.5	26.04
TraesCS4A01G337100.1	Wheat	mitochondrion, plastid	26.88	25.75
TraesCS5B01G536800.1	Wheat	cytosol, plastid	26.88	25.15
TraesCS5D01G534200.1	Wheat	cytosol	26.25	24.85
TraesCS5D01G534300.1	Wheat	cytosol	25.62	23.7
Zm00001d034836_P001	Maize	cytosol, nucleus, peroxisome	27.5	23.04
OQU90622	Sorghum	cytosol	25.62	22.91
TraesCS3A01G423700.2	Wheat	cytosol, mitochondrion, nucleus, plastid	28.75	22.89
Zm00001d042361_P002	Maize	plastid	26.25	22.34
Zm00001d012047_P001	Maize	mitochondrion	24.38	21.91
TraesCS3B01G459600.1	Wheat	mitochondrion	26.88	21.5
HORVU3Hr1G093570.4	Barley	mitochondrion	25.0	20.62
EES04106	Sorghum	cytosol, mitochondrion, nucleus, plastid	26.25	20.59
HORVU5Hr1G121080.2	Barley	endoplasmic reticulum, golgi	28.12	19.4
GSMUA_Achr10P...	Banana	plastid	31.25	7.01

Protein Annotations

EMBL:ACUP02012763	EnsemblPlants:KRG92567	EnsemblPlantsGene:GLYMA_20G219000	EntrezGene:100790253	Gene3D:3.90.810.10	InterPro:CRIB_dom
InterPro:CRIB_dom_sf	InterPro:IPR000095	InterPro:IPR036936	PANTHER:PTHR23177	PANTHER:PTHR23177:SF53	PFAM:PF00786
PFscan:PS50108	ProteinID:KRG92566.1	ProteinID:KRG92567	ProteinID:KRG92567.1	SEG:seg	SMART:SM00285
UniParc:UPI000233DCB2	UniProt:I1NIJ2	MapMan:27.4.5.2	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:45483028..45484496

Molecular Weight (calculated)

17783.1 Da

IEP (calculated)

6.013

GRAVY (calculated)

-0.507

Length

160 amino acids

Sequence
(BLAST)

001: MGDRMERLVI LPFSFGCVSE ASIVVGSPHP RRSRSDTDSP TAATKGPKGD KDISESLSGE SMRNLLRFHE DVQKSKTFLS FNRLLKGFKN IPQLFVNKEE
101: ELEEVEMDME IGCPTNVQHV THIGWDGFAA TETVTSSDSL RLPLQHCEFS NLKPKPGTSS

Best Arabidopsis Sequence Match ( AT5G16490.1 )
(BLAST)

001: MRDRMERLVV LPFSIGCISV SSVAVLSPLS KPHHHHSRQV IREQEEEDNM KNVFKFLAVS KPEISIGINR IFKSFKTISQ LFADKDEEKE EVETSGMEIG
101: VPTNVKHVSH IGWESGLTAA TGPGKGWEDL IPPELLAAAA SKKEINPHLH PTL

Arabidopsis Description

RIC4CRIB domain-containing protein RIC4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFD5]
SUBAcon: [extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.