Factsheet for Zm00001d034836_P001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

mitochondrion 2
peroxisome 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome
iPSORT:	mitochondrion
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU90622	Sorghum	cytosol	67.54	72.07
Os03t0847900-01	Rice	cytosol, peroxisome, plastid	46.07	53.01
TraesCS4A01G337100.1	Wheat	mitochondrion, plastid	42.93	49.1
TraesCS5B01G536700.1	Wheat	cytosol	42.93	48.52
TraesCS4A01G337200.1	Wheat	cytosol	43.46	47.98
TraesCS4A01G337000.1	Wheat	cytosol, plastid	39.27	47.77
TraesCS5D01G534200.1	Wheat	cytosol	41.36	46.75
TraesCS5D01G534300.1	Wheat	cytosol	41.88	46.24
TraesCS5B01G536800.1	Wheat	cytosol, plastid	40.31	45.03
HORVU5Hr1G121080.2	Barley	endoplasmic reticulum, golgi	40.84	33.62
KRH40309	Soybean	mitochondrion	29.84	32.95
VIT_04s0023g00400.t01	Wine grape	cytosol	24.61	32.64
KRH00915	Soybean	mitochondrion	30.37	32.58
KRH45224	Soybean	cytosol, nucleus, plastid	29.32	32.56
Zm00001d012047_P001	Maize	mitochondrion	29.32	31.46
Zm00001d042361_P002	Maize	plastid	29.84	30.32
AT5G16490.1	Thale cress	cytosol, extracellular	24.08	30.07
KRH01538	Soybean	cytosol, mitochondrion	27.23	30.06
CDY55580	Canola	cytosol	23.04	28.95
CDX69448	Canola	cytosol	23.04	28.95
Bra008619.1-P	Field mustard	cytosol	23.04	28.76
PGSC0003DMT400055683	Potato	plastid	23.04	28.57
VIT_05s0062g01090.t01	Wine grape	cytosol, mitochondrion, nucleus	23.56	28.3
CDY38108	Canola	cytosol	23.04	28.21
PGSC0003DMT400011671	Potato	cytosol	24.61	28.14
CDX85503	Canola	cytosol	12.57	27.59
KRG92567	Soybean	cytosol, golgi, plastid	23.04	27.5
Solyc11g008880.1.1	Tomato	mitochondrion	20.42	22.94
PGSC0003DMT400041700	Potato	mitochondrion	20.42	22.29
GSMUA_Achr10P...	Banana	plastid	28.27	7.57

Protein Annotations

EnsemblPlants:Zm00001d034836_P001	EnsemblPlants:Zm00001d034836_T001	EnsemblPlantsGene:Zm00001d034836	InterPro:CRIB_dom	InterPro:IPR000095	PANTHER:PTHR23177
PANTHER:PTHR23177:SF18	PFAM:PF00786	PFscan:PS50108	ProteinID:ONM11572.1	SEG:seg	UniParc:UPI00084592A7
UniProt:A0A1D6LBU8	MapMan:27.4.5.2	:	:	:	:

Description

Wiscott-Aldrich syndrome%2C C-terminal

Coordinates

chr1:+:303454791..303456205

Molecular Weight (calculated)

19251.3 Da

IEP (calculated)

4.640

GRAVY (calculated)

-0.231

Length

191 amino acids

Sequence
(BLAST)

001: MKDRRGSSSV GGGERFAVFP FSMGCMSQSA VSVADPGDKK AQGDPSSTAA ATVAREQSAA GAGSSEEGAG EAMTKEKAVA SSAAAATATA PGLVAAGVSR
101: LMKGIRSLSQ MFAGEDGGED EDDEEEEREM VIGYPTDVQH VGHIGWDGHN SKAGAAAAAM AGMVNAFSLP SSLSLRHLDM AMDRAVAHAS A

Best Arabidopsis Sequence Match ( AT5G16490.1 )
(BLAST)

001: MRDRMERLVV LPFSIGCISV SSVAVLSPLS KPHHHHSRQV IREQEEEDNM KNVFKFLAVS KPEISIGINR IFKSFKTISQ LFADKDEEKE EVETSGMEIG
101: VPTNVKHVSH IGWESGLTAA TGPGKGWEDL IPPELLAAAA SKKEINPHLH PTL

Arabidopsis Description

RIC4CRIB domain-containing protein RIC4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFD5]
SUBAcon: [extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.