CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45224	Soybean	cytosol, nucleus, plastid	91.33	91.86
VIT_05s0062g01090.t01	Wine grape	cytosol, mitochondrion, nucleus	41.62	45.28
PGSC0003DMT400011671	Potato	cytosol	41.04	42.52
PGSC0003DMT400055683	Potato	plastid	34.1	38.31
KRH40309	Soybean	mitochondrion	36.42	36.42
KRH00915	Soybean	mitochondrion	36.99	35.96
KRG92567	Soybean	cytosol, golgi, plastid	30.06	32.5
HORVU3Hr1G093570.4	Barley	mitochondrion	34.68	30.93
Zm00001d012047_P001	Maize	mitochondrion	30.64	29.78
TraesCS3B01G459600.1	Wheat	mitochondrion	34.1	29.5
TraesCS4A01G337000.1	Wheat	cytosol, plastid	26.59	29.3
Zm00001d042361_P002	Maize	plastid	31.79	29.26
Os03t0847900-01	Rice	cytosol, peroxisome, plastid	27.75	28.92
TraesCS5D01G534300.1	Wheat	cytosol	28.9	28.9
TraesCS3A01G423700.2	Wheat	cytosol, mitochondrion, nucleus, plastid	32.95	28.36
TraesCS5D01G534200.1	Wheat	cytosol	27.17	27.81
EES04106	Sorghum	cytosol, mitochondrion, nucleus, plastid	32.37	27.45
Zm00001d034836_P001	Maize	cytosol, nucleus, peroxisome	30.06	27.23
TraesCS4A01G337200.1	Wheat	cytosol	27.17	27.17
TraesCS4A01G337100.1	Wheat	mitochondrion, plastid	25.43	26.35
TraesCS5B01G536800.1	Wheat	cytosol, plastid	26.01	26.32
OQU90622	Sorghum	cytosol	27.17	26.26
TraesCS5B01G536700.1	Wheat	cytosol	25.43	26.04
HORVU5Hr1G121080.2	Barley	endoplasmic reticulum, golgi	26.59	19.83
GSMUA_Achr10P...	Banana	plastid	36.99	8.98

Protein Annotations

EMBL:ACUP02011519	EnsemblPlants:KRH01538	EnsemblPlantsGene:GLYMA_18G283500	EntrezGene:100812141	InterPro:CRIB_dom	InterPro:IPR000095
PANTHER:PTHR23177	PANTHER:PTHR23177:SF53	PFAM:PF00786	PFscan:PS50108	ProteinID:KRH01538	ProteinID:KRH01538.1
SMART:SM00285	UniParc:UPI000233EFBD	UniProt:I1N4Z7	MapMan:27.4.5.2	:	:

Description

hypothetical protein

Coordinates

chr18:-:56428635..56430557

Molecular Weight (calculated)

19339.4 Da

IEP (calculated)

10.510

GRAVY (calculated)

-0.512

Length

173 amino acids

Sequence
(BLAST)

001: MRNRIERLVV PWSFSCASHS SVKLGAPKGP KEDSKGTIVS RRQEGQDRSF IRTQMKRGKP SGFLVLPKPN VATGIQRIIK GIKNLSQLFV YKKEDVEKME
101: PEMEIGYPTD VKHVTHIGID GSTTITNNVK GWDNLKAPEL LSLSPISFKQ FELAMASQAQ YPLINDLNSS KRG

Best Arabidopsis Sequence Match ( AT5G16490.1 )
(BLAST)

001: MRDRMERLVV LPFSIGCISV SSVAVLSPLS KPHHHHSRQV IREQEEEDNM KNVFKFLAVS KPEISIGINR IFKSFKTISQ LFADKDEEKE EVETSGMEIG
101: VPTNVKHVSH IGWESGLTAA TGPGKGWEDL IPPELLAAAA SKKEINPHLH PTL

Arabidopsis Description

RIC4CRIB domain-containing protein RIC4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFD5]
SUBAcon: [extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.