Factsheet for TraesCS3A01G423700.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

plastid 1
mitochondrion 2
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G459600.1	Wheat	mitochondrion	81.09	81.5
HORVU3Hr1G093570.4	Barley	mitochondrion	73.13	75.77
Zm00001d012047_P001	Maize	mitochondrion	48.76	55.06
Zm00001d042361_P002	Maize	plastid	51.24	54.79
EES04106	Sorghum	cytosol, mitochondrion, nucleus, plastid	53.23	52.45
VIT_04s0023g00400.t01	Wine grape	cytosol	24.88	34.72
VIT_05s0062g01090.t01	Wine grape	cytosol, mitochondrion, nucleus	27.36	34.59
KRH45224	Soybean	cytosol, nucleus, plastid	28.36	33.14
TraesCS4A01G337000.1	Wheat	cytosol, plastid	25.87	33.12
KRH01538	Soybean	cytosol, mitochondrion	28.36	32.95
PGSC0003DMT400055683	Potato	plastid	24.88	32.47
TraesCS4A01G337200.1	Wheat	cytosol	27.86	32.37
TraesCS4A01G337100.1	Wheat	mitochondrion, plastid	26.87	32.34
PGSC0003DMT400011671	Potato	cytosol	26.37	31.74
Solyc11g008880.1.1	Tomato	mitochondrion	26.37	31.18
CDY55580	Canola	cytosol	23.38	30.92
CDX69448	Canola	cytosol	22.89	30.26
Bra008619.1-P	Field mustard	cytosol	22.89	30.07
AT5G16490.1	Thale cress	cytosol, extracellular	22.39	29.41
PGSC0003DMT400041700	Potato	mitochondrion	25.37	29.14
KRG92567	Soybean	cytosol, golgi, plastid	22.89	28.75
KRH00915	Soybean	mitochondrion	24.88	28.09
KRH40309	Soybean	mitochondrion	23.38	27.17
CDY38108	Canola	cytosol	20.9	26.92
CDX85503	Canola	cytosol	10.95	25.29
GSMUA_Achr10P...	Banana	plastid	27.86	7.85

Protein Annotations

EnsemblPlants:TraesCS3A01G423700.2	EnsemblPlantsGene:TraesCS3A01G423700	Gene3D:3.90.810.10	InterPro:CRIB_dom	InterPro:CRIB_dom_sf	InterPro:IPR000095
InterPro:IPR036936	PANTHER:PTHR23177	PANTHER:PTHR23177:SF53	PFAM:PF00786	PFscan:PS50108	SEG:seg
SMART:SM00285	TIGR:cd00132	MapMan:27.4.5.2	:	:	:

Description

No Description!

Coordinates

chr3A:-:666121685..666122403

Molecular Weight (calculated)

20811.1 Da

IEP (calculated)

9.734

GRAVY (calculated)

-0.454

Length

201 amino acids

Sequence
(BLAST)

001: MGSREQQRGR RDRFIVIPFS ACRSAASVDV VHSKKPRGAG CSGEGTSAAP GIKPAKGESL SLVARLLRGF KNLSHQIFAV YDDEEEEEEE PEMVIGLPTD
101: VKHVAHIGWD GSTSTTSSVR SWNRAAPPPG TTAPATASAS TSVSASSSAA PPPPKAQPPA LSARQFELAM AAQASAATTG TTASTSGTGT SGAARRHRHY
201: S

Best Arabidopsis Sequence Match ( AT5G16490.1 )
(BLAST)

001: MRDRMERLVV LPFSIGCISV SSVAVLSPLS KPHHHHSRQV IREQEEEDNM KNVFKFLAVS KPEISIGINR IFKSFKTISQ LFADKDEEKE EVETSGMEIG
101: VPTNVKHVSH IGWESGLTAA TGPGKGWEDL IPPELLAAAA SKKEINPHLH PTL

Arabidopsis Description

RIC4CRIB domain-containing protein RIC4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFD5]
SUBAcon: [extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.