Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G263400.1 | Wheat | cytosol | 67.26 | 100.0 |
| TraesCS1A01G263300.1 | Wheat | extracellular, unclear | 67.26 | 100.0 |
| Bra012346.1-P | Field mustard | cytosol | 60.71 | 91.07 |
| EES18250 | Sorghum | cytosol | 60.71 | 91.07 |
| CDY25756 | Canola | cytosol | 60.71 | 91.07 |
| CDY12506 | Canola | cytosol | 60.71 | 91.07 |
| Zm00001d038218_P001 | Maize | mitochondrion | 60.12 | 90.18 |
| Zm00001d010236_P001 | Maize | plastid | 60.12 | 90.18 |
| CDY21393 | Canola | cytosol | 60.12 | 90.18 |
| CDY04780 | Canola | cytosol | 60.12 | 90.18 |
| Bra024541.1-P | Field mustard | cytosol | 60.12 | 90.18 |
| CDX90744 | Canola | cytosol | 58.93 | 88.39 |
| Bra000699.1-P | Field mustard | cytosol | 58.93 | 88.39 |
| Bra037901.1-P | Field mustard | cytosol | 52.38 | 88.0 |
| AT1G22840.1 | Thale cress | cytosol | 59.52 | 87.72 |
| CDY05083 | Canola | cytosol | 58.33 | 87.5 |
| AT4G10040.1 | Thale cress | cytosol | 57.74 | 86.61 |
| TraesCS1B01G273900.1 | Wheat | cytosol | 57.14 | 84.96 |
| CDX99521 | Canola | cytosol | 52.38 | 83.02 |
| HORVU2Hr1G127630.1 | Barley | cytosol | 54.17 | 80.53 |
| HORVU3Hr1G090840.1 | Barley | mitochondrion, plastid | 61.9 | 70.27 |
Protein Annotations
| Gene3D:1.10.760.10 | MapMan:2.4.4.1 | UniProt:A0A287FYP3 | InterPro:Cyt_c-like_dom | InterPro:Cyt_c-like_dom_sf | InterPro:Cyt_c_1A/1B |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | GO:GO:0006091 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009055 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0020037 | GO:GO:0022900 | GO:GO:0046872 | GO:GO:0055114 |
| GO:GO:0070469 | EnsemblPlantsGene:HORVU1Hr1G063940 | EnsemblPlants:HORVU1Hr1G063940.1 | InterPro:IPR009056 | InterPro:IPR036909 | PFAM:PF00034 |
| PRINTS:PR00604 | PFscan:PS51007 | PANTHER:PTHR11961 | PANTHER:PTHR11961:SF9 | SUPFAM:SSF46626 | UniParc:UPI000B464314 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr1H:+:457848206..457851081
Molecular Weight (calculated)
18154.6 Da
IEP (calculated)
10.273
GRAVY (calculated)
-0.627
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MHPRPQGQSC TSAPLDRSIQ HIPHEIARSQ KGEQKFHLAS PPRVLRRVSA AAAAAMASFS EAPPGNPDAG AKIFKTKCAQ CHTVDAGAGH KQGPNLHGLF
101: GRQSGTTAGY SYSAANKNKA VEWEENTLYD YLLNPKKYIP GTKMVFPGLK KPQDRADLIA YLKKATSS
101: GRQSGTTAGY SYSAANKNKA VEWEENTLYD YLLNPKKYIP GTKMVFPGLK KPQDRADLIA YLKKATSS
001: MASFDEAPPG NAKAGEKIFR TKCAQCHTVE AGAGHKQGPN LNGLFGRQSG TTAGYSYSAA NKNKAVEWEE KALYDYLLNP KKYIPGTKMV FPGLKKPQDR
101: ADLIAYLKES TAPK
101: ADLIAYLKES TAPK
Arabidopsis Description
CYTC-1CYTC-1 [Source:UniProtKB/TrEMBL;Acc:A0A178W284]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.