Factsheet for Zm00001d038218_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

extracellular: 20408568
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264
mitochondrion: 29575040

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
GRMZM5G867512_P01
Zm00001d007842_P002
Zm00001d013559_P001
Zm00001d018742_P001
Zm00001d033404_P002
Zm00001d033859_P002
Zm00001d033861_P001
Zm00001d034212_P001
Zm00001d048085_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22840.1	Zm00001d007842_P002	AT4G08150.1	21798944
AT1G22840.1	Zm00001d013559_P001	AT4G08150.1	21798944
AT1G22840.1	Zm00001d018742_P001	AT4G08150.1	21798944
AT1G22840.1	Zm00001d033404_P002	AT4G08150.1	21798944
AT1G22840.1	Zm00001d033859_P002	AT4G08150.1	21798944
AT1G22840.1	Zm00001d033861_P001	AT4G08150.1	21798944
AT1G22840.1	Zm00001d034212_P001	AT4G08150.1	21798944
AT1G22840.1	GRMZM5G867512_P01	ATMG00960.1	18644794
AT4G10040.1	Zm00001d048085_P002	AT3G29575.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES18250	Sorghum	cytosol	97.32	97.32
Zm00001d010236_P001	Maize	plastid	95.54	95.54
Bra012346.1-P	Field mustard	cytosol	92.86	92.86
CDY25756	Canola	cytosol	92.86	92.86
CDY12506	Canola	cytosol	92.86	92.86
Bra024541.1-P	Field mustard	cytosol	91.96	91.96
CDY21393	Canola	cytosol	91.96	91.96
CDY04780	Canola	cytosol	91.96	91.96
Zm00001d042600_P001	Maize	cytosol	91.07	91.07
CDX90744	Canola	cytosol	91.07	91.07
Bra000699.1-P	Field mustard	cytosol	91.07	91.07
CDY05083	Canola	cytosol	90.18	90.18
Bra037901.1-P	Field mustard	cytosol	80.36	90.0
TraesCS1A01G263300.1	Wheat	extracellular, unclear	90.18	89.38
TraesCS1D01G263400.1	Wheat	cytosol	90.18	89.38
AT4G10040.1	Thale cress	cytosol	89.29	89.29
AT1G22840.1	Thale cress	cytosol	89.29	87.72
CDX99521	Canola	cytosol	80.36	84.91
Zm00001d026709_P001	Maize	cytosol	78.57	78.57
TraesCS1B01G273900.1	Wheat	cytosol	75.89	75.22
HORVU1Hr1G063940.1	Barley	cytosol, mitochondrion, nucleus, plastid	90.18	60.12

Protein Annotations

Gene3D:1.10.760.10	EntrezGene:100383938	MapMan:2.4.4.1	ProteinID:AQK86065.1	EMBL:BT068674	UniProt:C0PK55
InterPro:Cyt_c-like_dom	InterPro:Cyt_c-like_dom_sf	InterPro:Cyt_c_1A/1B	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0016020	GO:GO:0020037
GO:GO:0022900	GO:GO:0046872	GO:GO:0055114	GO:GO:0070469	InterPro:IPR009056	InterPro:IPR036909
PFAM:PF00034	PRINTS:PR00604	PFscan:PS51007	PANTHER:PTHR11961	PANTHER:PTHR11961:SF9	SUPFAM:SSF46626
UniParc:UPI000195CD0E	EnsemblPlantsGene:Zm00001d038218	EnsemblPlants:Zm00001d038218_P001	EnsemblPlants:Zm00001d038218_T001	:	:

Description

Cytochrome c-2

Coordinates

chr6:+:151836744..151842571

Molecular Weight (calculated)

12167.5 Da

IEP (calculated)

9.779

GRAVY (calculated)

-0.651

Length

112 amino acids

Sequence
(BLAST)

001: MASFSEAPPG NPKAGEKIFK TKCAQCHTVD KGAGHKQGPN LNGLFGRQSG TTAGYSYSAG NKNKAVVWEE DTLYEYLLNP KKYIPGTKMV FPGLKKPQER
101: ADLIAYLKEA TA

Best Arabidopsis Sequence Match ( AT1G22840.1 )
(BLAST)

001: MASFDEAPPG NAKAGEKIFR TKCAQCHTVE AGAGHKQGPN LNGLFGRQSG TTAGYSYSAA NKNKAVEWEE KALYDYLLNP KKYIPGTKMV FPGLKKPQDR
101: ADLIAYLKES TAPK

Arabidopsis Description

CYTC-1CYTC-1 [Source:UniProtKB/TrEMBL;Acc:A0A178W284]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.