Factsheet for HORVU3Hr1G090840.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
TargetP:	mitochondrion
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
BAV58158
HORVU2Hr1G061320.3
HORVU2Hr1G070240.1
HORVU2Hr1G070250.1
HORVU2Hr1G086550.1
HORVU3Hr1G055030.1
HORVU4Hr1G003360.1
HORVU4Hr1G003410.3
HORVU4Hr1G009730.1
HORVU4Hr1G035770.1
HORVU4Hr1G067930.1
HORVU5Hr1G058280.1
HORVU5Hr1G098570.6

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22840.1	HORVU2Hr1G061320.3	AT4G08150.1	21798944
AT1G22840.1	HORVU4Hr1G003360.1	AT4G08150.1	21798944
AT1G22840.1	HORVU4Hr1G003410.3	AT4G08150.1	21798944
AT1G22840.1	HORVU4Hr1G009730.1	AT4G08150.1	21798944
AT1G22840.1	HORVU5Hr1G098570.6	AT4G08150.1	21798944
AT1G22840.1	BAV58158	ATMG00960.1	18644794
AT1G22840.1	HORVU2Hr1G070240.1	ATMG00960.1	18644794
AT1G22840.1	HORVU2Hr1G070250.1	ATMG00960.1	18644794
AT1G22840.1	HORVU2Hr1G086550.1	ATMG00960.1	18644794
AT1G22840.1	HORVU3Hr1G055030.1	ATMG00960.1	18644794
AT1G22840.1	HORVU5Hr1G058280.1	ATMG00960.1	18644794
AT4G10040.1	HORVU4Hr1G035770.1	AT3G29575.1	21798944
AT4G10040.1	HORVU4Hr1G067930.1	AT3G29575.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G400400.1	Wheat	cytosol	73.65	97.32
TraesCS3B01G438700.1	Wheat	cytosol	73.65	97.32
TraesCS3A01G405000.1	Wheat	cytosol	72.97	96.43
EES03996	Sorghum	cytosol	71.62	94.64
VIT_18s0001g05810.t01	Wine grape	cytosol	70.95	93.75
Zm00001d042600_P001	Maize	cytosol	70.27	92.86
Bra000699.1-P	Field mustard	cytosol	68.92	91.07
CDX90744	Canola	cytosol	68.92	91.07
Solyc01g103220.2.1	Tomato	extracellular, plastid, unclear	68.92	91.07
AT4G10040.1	Thale cress	cytosol	68.24	90.18
PGSC0003DMT400063997	Potato	cytosol	68.24	90.18
PGSC0003DMT400002609	Potato	cytosol	68.24	90.18
CDY05083	Canola	cytosol	68.24	90.18
Bra037901.1-P	Field mustard	cytosol	60.81	90.0
CDY25756	Canola	cytosol	67.57	89.29
CDY12506	Canola	cytosol	67.57	89.29
Solyc11g042420.1.1	Tomato	cytosol	67.57	89.29
Bra012346.1-P	Field mustard	cytosol	67.57	89.29
CDY21393	Canola	cytosol	66.89	88.39
CDY04780	Canola	cytosol	66.89	88.39
Bra024541.1-P	Field mustard	cytosol	66.89	88.39
HORVU2Hr1G127630.1	Barley	cytosol	64.86	84.96
CDX99521	Canola	cytosol	60.81	84.91
AT1G22840.1	Thale cress	cytosol	64.86	84.21
Os04t0693050-01	Rice	plastid	47.3	73.68
HORVU1Hr1G063940.1	Barley	cytosol, mitochondrion, nucleus, plastid	70.27	61.9
GSMUA_Achr5P16900_001	Banana	cytosol	35.81	48.62
KRH16722	Soybean	mitochondrion	22.3	36.67

Protein Annotations

Gene3D:1.10.760.10	MapMan:2.4.4.1	UniProt:A0A287M8W6	InterPro:Cyt_c-like_dom	InterPro:Cyt_c-like_dom_sf	InterPro:Cyt_c_1A/1B
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055
GO:GO:0009987	GO:GO:0016020	GO:GO:0020037	GO:GO:0022900	GO:GO:0046872	GO:GO:0055114
GO:GO:0070469	EnsemblPlantsGene:HORVU3Hr1G090840	EnsemblPlants:HORVU3Hr1G090840.1	InterPro:IPR009056	InterPro:IPR036909	PFAM:PF00034
PRINTS:PR00604	PFscan:PS51007	PANTHER:PTHR11961	PANTHER:PTHR11961:SF9	SUPFAM:SSF46626	UniParc:UPI000B47B5C0
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr3H:+:633387926..633390516

Molecular Weight (calculated)

15792.8 Da

IEP (calculated)

10.323

GRAVY (calculated)

-0.500

Length

148 amino acids

Sequence
(BLAST)

001: RARSPFPAAP SHLQPREHLT LASSPATVRA GSSAAAMASF SEAPPGNPAS GEKIFKTKCA QCHTVDKGAG HKQGPNLNGL FGRQSGTTPG YSYSTANKTM
101: AVVWEEKTLY DYLLNPKKYI PGTKMVFPGL KKPQERADLI AYLKSATA

Best Arabidopsis Sequence Match ( AT4G10040.1 )
(BLAST)

001: MASFDEAPPG NPKAGEKIFR TKCAQCHTVE KGAGHKQGPN LNGLFGRQSG TTPGYSYSAA NKSMAVNWEE KTLYDYLLNP KKYIPGTKMV FPGLKKPQDR
101: ADLIAYLKEG TA

Arabidopsis Description

CYTC-2CYTC-2 [Source:UniProtKB/TrEMBL;Acc:A0A178UZN3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.