Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 3
- cytosol 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os04t0693050-01 | Rice | plastid | 46.79 | 53.68 |
| Zm00001d042600_P001 | Maize | cytosol | 50.46 | 49.11 |
| Solyc11g042420.1.1 | Tomato | cytosol | 50.46 | 49.11 |
| GSMUA_Achr6P18470_001 | Banana | cytosol | 50.46 | 49.11 |
| EES03996 | Sorghum | cytosol | 50.46 | 49.11 |
| PGSC0003DMT400002609 | Potato | cytosol | 49.54 | 48.21 |
| VIT_18s0001g05810.t01 | Wine grape | cytosol | 49.54 | 48.21 |
| GSMUA_Achr11P... | Banana | cytosol | 49.54 | 47.79 |
| PGSC0003DMT400063997 | Potato | cytosol | 48.62 | 47.32 |
| Solyc01g103220.2.1 | Tomato | extracellular, plastid, unclear | 47.71 | 46.43 |
| GSMUA_Achr5P01400_001 | Banana | cytosol | 47.71 | 46.43 |
| TraesCS3B01G438700.1 | Wheat | cytosol | 47.71 | 46.43 |
| TraesCS3D01G400400.1 | Wheat | cytosol | 47.71 | 46.43 |
| TraesCS3A01G405000.1 | Wheat | cytosol | 46.79 | 45.54 |
| GSMUA_Achr7P23550_001 | Banana | cytosol | 45.87 | 44.64 |
| HORVU3Hr1G090840.1 | Barley | mitochondrion, plastid | 48.62 | 35.81 |
| KRH16722 | Soybean | mitochondrion | 12.84 | 15.56 |
| GSMUA_Achr10P... | Banana | cytosol | 6.42 | 15.56 |
Protein Annotations
| Gene3D:1.10.760.10 | MapMan:2.4.4.1 | InterPro:Cyt_c-like_dom | InterPro:Cyt_c-like_dom_sf | InterPro:Cyt_c_1A/1B | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005739 | GO:GO:0006091 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009055 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0020037 | GO:GO:0022900 | GO:GO:0046872 | GO:GO:0055114 | GO:GO:0070469 |
| EnsemblPlantsGene:GSMUA_Achr5G16900_001 | EnsemblPlants:GSMUA_Achr5P16900_001 | EnsemblPlants:GSMUA_Achr5T16900_001 | InterPro:IPR009056 | InterPro:IPR036909 | UniProt:M0SZ69 |
| PFAM:PF00034 | PRINTS:PR00604 | PFscan:PS51007 | PANTHER:PTHR11961 | PANTHER:PTHR11961:SF9 | SUPFAM:SSF46626 |
| UniParc:UPI0002953F2B | : | : | : | : | : |
Description
Cytochrome c [Source:GMGC_GENE;Acc:GSMUA_Achr5G16900_001]
Coordinates
chr5:+:15588248..15589930
Molecular Weight (calculated)
12141.5 Da
IEP (calculated)
7.123
GRAVY (calculated)
-0.328
Length
109 amino acids
Sequence
(BLAST)
(BLAST)
001: MASFEDAPPG DAKSGHKIFQ SKCAHCHTVE KGAGHKHGPN LHGLFGKQYG TTPGYSYSTA SKNIDVIWEE NSLYDYLLNP KEVMTGDLLM VKIYARYVEL
101: ITCVYTLQL
101: ITCVYTLQL
001: MASFDEAPPG NPKAGEKIFR TKCAQCHTVE KGAGHKQGPN LNGLFGRQSG TTPGYSYSAA NKSMAVNWEE KTLYDYLLNP KKYIPGTKMV FPGLKKPQDR
101: ADLIAYLKEG TA
101: ADLIAYLKEG TA
Arabidopsis Description
CYTC-2CYTC-2 [Source:UniProtKB/TrEMBL;Acc:A0A178UZN3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.